miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAAGATAATGCCATGAATTTG

selected species: Oryza sativa



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM520638-18676 TAAGATAATGCCATGAATTTG AATTCACAGGCCCTATCTTGTG down 3 1


Secondary structure

CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACT
----------------------AATTCACAGGCCCTATCTTGTG 	46
-----------------------------------TATCTTGTGGTATGAACTGGG 	1
--------------------------------------------GTATGAACTGGGTACGCGATGATTTG 	1
--------------------------------------------------------------------------------------------ATAAGATAATGCCATGAATTTG 	3
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTTG 	211
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTT 	2
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATT 	21
----------------------------------------------------------------------------------------------AAGATAATGCCATGAATTTG 	1
----------------------------------------------------------------------------------------------AAGATAATGCCATGAATTTGTCAA 	1
--------------------------------------------------------------------------------------------------TAATGCCATGAATTTGTCA 	2
--------------------------------------------------------------------------------------------------TAATGCCATGAATTTGTCAAG 	18
---------------------------------------------------------------------------------------------------AATGCCATGAATTTGTCAAG 	2
---------------------------------------------------------------------------------------------------AATGCCATGAATTTGTCAAGC 	1
----------------------------------------------------------------------------------------------------ATGCCATGAATTTGTCAAGCG 	11
----------------------------------------------------------------------------------------------------ATGCCATGAATTTGTCAAGC 	10
------------------------------------------------------------------------------------------------------GCCATGAATTTGTCAAGCGTT 	2

Overlaps with: MNEST004169
Overlaps with miRBase pre-miRNAs: osa-MIR1428e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM686040-31373 TAAGATAATGCCATGAATTTG AATTCACAGGCCCTATCTTGTG down 3 1


Secondary structure

CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACT
---------------------------------------------TATGAACTGGGTACGCGATGA 	1
---------------------------------------------------------------------------------------TTACCATAAGATAATGCCATG 	1
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTTG 	5
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTT 	3
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATT 	1
----------------------------------------------------------------------------------------------AAGATAATGCCATGAATTT 	1

Overlaps with: MNEST004169
Overlaps with miRBase pre-miRNAs: osa-MIR1428e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520640-18679 TAAGATAATGCCATGAATTTG AATTCACAGGCCCTATCTTGTG down 3 1


Secondary structure

CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACT
-----------------TGGCGAATTCACAGGCCCTATC 	1
--------------------CGAATTCACAGGCCCTATCTTG 	1
----------------------AATTCACAGGCCCTATCTTGTG 	58
-----------------------------AGGCCCTATCTTGTGGTATGAA 	3
-----------------------------AGGCCCTATCTTGTGGTATGAACT 	1
---------------------------------------TTGTGGTATGAACTGGGTAC 	1
----------------------------------------TGTGGTATGAACTGGGTACGCGAT 	1
--------------------------------------------------------------------------------------------ATAAGATAATGCCATGAATTTGTC 	1
--------------------------------------------------------------------------------------------ATAAGATAATGCCATGAATTTG 	1
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTTG 	181
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATT 	10
----------------------------------------------------------------------------------------------AAGATAATGCCATGAATTT 	3
--------------------------------------------------------------------------------------------------TAATGCCATGAATTTGTCA 	3
--------------------------------------------------------------------------------------------------TAATGCCATGAATTTGTCAA 	1
--------------------------------------------------------------------------------------------------TAATGCCATGAATTTGTCAAG 	30
---------------------------------------------------------------------------------------------------AATGCCATGAATTTGTCAAGC 	1
----------------------------------------------------------------------------------------------------ATGCCATGAATTTGTCAAGCG 	9
----------------------------------------------------------------------------------------------------ATGCCATGAATTTGTCAAGC 	4
------------------------------------------------------------------------------------------------------GCCATGAATTTGTCAAGCGTT 	2

Overlaps with: MNEST004169
Overlaps with miRBase pre-miRNAs: osa-MIR1428e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM686039-31370 TAAGATAATGCCATGAATTTG AATTCACAGGCCCTATCTTGTG down 3 1


Secondary structure

CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACT
-----------------------------------------GTGGTATGAACTGGGTACGCGAT 	1
--------------------------------------------GTATGAACTGGGTACGCGATG 	1
-----------------------------------------------TGAACTGGGTACGCGATGATT 	1
------------------------------------------------GAACTGGGTACGCGATGATT 	1
---------------------------------------------------CTGGGTACGCGATGATTTGCACT 	1
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTTG 	19
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTT 	7
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATT 	2

Overlaps with: MNEST004169
Overlaps with miRBase pre-miRNAs: osa-MIR1428e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520636-18672 TAAGATAATGCCATGAATTTG AATTCACAGGCCCTATCTTGTG down 3 1


Secondary structure

CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACT
--------------------------------------------------------------ATGATTTGCACTGCGTATTGGGGG 	1
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTTG 	7

Overlaps with: MNEST004169
Overlaps with miRBase pre-miRNAs: osa-MIR1428e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM520639-18678 TAAGATAATGCCATGAATTTG AATTCACAGGCCCTATCTTGTG down 3 1


Secondary structure

CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACT
---------------------------------------------------------------------------------------------TAAGATAATGCCATGAATTTG 	10
----------------------------------------------------------------------------------------------------ATGCCATGAATTTGTCAAGCG 	2
----------------------------------------------------------------------------------------------------ATGCCATGAATTTGTCAAG 	1

Overlaps with: MNEST004169
Overlaps with miRBase pre-miRNAs: osa-MIR1428e
HuntMi prediction: true miRNA