miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TAAGCGTATAGCTTTTCCCCTT

selected species: Drosophila melanogaster

21 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
----------------------GGGGTAAAACTGTACGTTATAT 	1
----------------------GGGGTAAAACTGTACGTTATATG 	22
---------------------------------------------TGCCCTTCTGTGATATTCA 	10
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	18
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	146
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	2

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM399106-16287	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	4
----------------------GGGGTAAAACTGTACGTTATAT 	1
----------------------GGGGTAAAACTGTACGTTATATG 	28
---------------------------------------------TGCCCTTCTGTGATATTCA 	12
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	19
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	3
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	131
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM466487_wt_total	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATAT 	1
---------------------GGGGGTAAAACTGTACGTTATATG 	1
----------------------GGGGTAAAACTGTACGTTATA 	6
----------------------GGGGTAAAACTGTACGTTATAT 	13
----------------------GGGGTAAAACTGTACGTTATATG 	99
----------------------GGGGTAAAACTGTACGTTAT 	1
----------------------GGGGTAAAACTGTACGTTA 	2
---------------------------------------------TGCCCTTCTGTGATATTCA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	19
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	3
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	221
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	27
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	4
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	2021
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	35
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTTA 	1
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	4
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	2
------------------------------------------------------------------AGCGTATAGCTTTTCCCCT 	2
-------------------------------------------------------------------GCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM399105-16286	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
----------------------GGGGTAAAACTGTACGTTATAT 	3
----------------------GGGGTAAAACTGTACGTTAT 	1
----------------------GGGGTAAAACTGTACGTTATATGT 	2
----------------------GGGGTAAAACTGTACGTTATATG 	19
---------------------------------------------TGCCCTTCTGTGATATTCA 	7
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	4
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	12
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	3
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	122

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM360262-14327	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTAT 	1
---------------------GGGGGTAAAACTGTACGTTATATG 	3
----------------------GGGGTAAAACTGTACGTTATAT 	3
----------------------GGGGTAAAACTGTACGTTAT 	3
----------------------GGGGTAAAACTGTACGTTATATG 	53
----------------------GGGGTAAAACTGTACGTTATA 	2
---------------------------------------------TGCCCTTCTGTGATATTCA 	9
---------------------------------------------------------------ATAAGCGTATAGCTTTTCCCCTT 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	7
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAAA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	14
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	306

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM385822-16273	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATAT 	1
---------------------GGGGGTAAAACTGTACGTTA 	1
---------------------GGGGGTAAAACTGTACGTTATA 	2
----------------------GGGGTAAAACTGTACGTTATA 	22
----------------------GGGGTAAAACTGTACGTTATAT 	29
----------------------GGGGTAAAACTGTACGTTATATG 	13
----------------------GGGGTAAAACTGTACGTTAT 	15
----------------------GGGGTAAAACTGTACGTTA 	4
---------------------------------------------TGCCCTTCTGTGATATTCAT 	1
---------------------------------------------TGCCCTTCTGTGATATTCA 	1
---------------------------------------------------------------ATAAGCGTATAGCTTTTCCCCTT 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	71
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	54
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	385
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	10
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	3973
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	14
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	1
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	2
-------------------------------------------------------------------GCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM360256-14324	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	1
----------------------GGGGTAAAACTGTACGTTATATG 	3
----------------------GGGGTAAAACTGTACGTTATA 	1
---------------------------------------------TGCCCTTCTGTGATATTCA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	7

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM466494_r2d2_heterozygotes_untreated	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	3
----------------------GGGGTAAAACTGTACGTTATA 	11
----------------------GGGGTAAAACTGTACGTTATAT 	16
----------------------GGGGTAAAACTGTACGTTATATG 	125
----------------------GGGGTAAAACTGTACGTTA 	1
---------------------------------------------TGCCCTTCTGTGATATTCA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	4
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	4
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	150
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	6
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	1131
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	25
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	2
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	2

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM466496_r2d2_homozygotes_untreated	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATAT 	3
---------------------GGGGGTAAAACTGTACGTTATATG 	5
----------------------GGGGTAAAACTGTACGTTATA 	12
----------------------GGGGTAAAACTGTACGTTATAT 	37
----------------------GGGGTAAAACTGTACGTTATATG 	156
----------------------GGGGTAAAACTGTACGTTAT 	7
----------------------GGGGTAAAACTGTACGTTA 	3
----------------------GGGGTAAAACTGTACGTTATATGT 	2
---------------------------------------------TGCCCTTCTGTGATATTCA 	4
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	91
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	16
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	3
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	816
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	25
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM371638-15389	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	8
---------------------GGGGGTAAAACTGTACGTTATA 	5
----------------------GGGGTAAAACTGTACGTTATAT 	2
----------------------GGGGTAAAACTGTACGTTATATG 	77
----------------------GGGGTAAAACTGTACGTTAT 	2
----------------------GGGGTAAAACTGTACGTTA 	1
----------------------GGGGTAAAACTGTACGTTATATGT 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	29
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	169
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	9
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	1
------------------------------------------------------------------AGCGTATAGCTTTTCCCCT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM343833-15151	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	4
----------------------GGGGTAAAACTGTACGTTAT 	4
----------------------GGGGTAAAACTGTACGTTA 	3
----------------------GGGGTAAAACTGTACGTTATA 	13
----------------------GGGGTAAAACTGTACGTTATAT 	3
----------------------GGGGTAAAACTGTACGTTATATGT 	2
----------------------GGGGTAAAACTGTACGTTATATG 	79
---------------------------------------------TGCCCTTCTGTGATATTCA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	9
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	77
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	542
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	8

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Drosophila melanogaster	GSM343832-15149	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	6
---------------------GGGGGTAAAACTGTACGTTATA 	2
----------------------GGGGTAAAACTGTACGTTAT 	1
----------------------GGGGTAAAACTGTACGTTA 	3
----------------------GGGGTAAAACTGTACGTTATA 	18
----------------------GGGGTAAAACTGTACGTTATAT 	2
----------------------GGGGTAAAACTGTACGTTATATGT 	1
----------------------GGGGTAAAACTGTACGTTATATG 	98
---------------------------------------------TGCCCTTCTGTGATATTCA 	4
---------------------------------------------------------------ATAAGCGTATAGCTTTTCCCCTT 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	18
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	241
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	5
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	2277
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	17
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	2

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Drosophila melanogaster	GSM399100-5263	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---ATATTGCTCAACATTTTGG 	1
---------------------GGGGGTAAAACTGTACGTTATATG 	4
---------------------GGGGGTAAAACTGTACGTTATA 	2
----------------------GGGGTAAAACTGTACGTTA 	2
----------------------GGGGTAAAACTGTACGTTATA 	4
----------------------GGGGTAAAACTGTACGTTATAT 	1
----------------------GGGGTAAAACTGTACGTTATATGT 	2
----------------------GGGGTAAAACTGTACGTTATATG 	86
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	48
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	271
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	1641
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	3
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Drosophila melanogaster	GSM360260-14326	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	2
----------------------GGGGTAAAACTGTACGTTATAT 	4
----------------------GGGGTAAAACTGTACGTTA 	1
----------------------GGGGTAAAACTGTACGTTATATG 	43
---------------------------------------------TGCCCTTCTGTGATATTCA 	8
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	3
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	8
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	75
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Drosophila melanogaster	GSM322543-14323	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
----------------------GGGGTAAAACTGTACGTTATATG 	116
----------------------GGGGTAAAACTGTACGTTATAT 	19
----------------------GGGGTAAAACTGTACGTTATA 	4
---------------------------------------------TGCCCTTCTGTGATATTCA 	8
---------------------------------------------------------------ATAAGCGTATAGCTTTTCCCCTT 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	61
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	4
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	4
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	610
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	10

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Drosophila melanogaster	GSM399101-5265	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATA 	2
----------------------GGGGTAAAACTGTACGTTAT 	2
----------------------GGGGTAAAACTGTACGTTA 	5
----------------------GGGGTAAAACTGTACGTTATA 	5
----------------------GGGGTAAAACTGTACGTTATAT 	2
----------------------GGGGTAAAACTGTACGTTATATGT 	2
----------------------GGGGTAAAACTGTACGTTATATG 	56
---------------------------------------------TGCCCTTCTGTGATATTCA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	23
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	351
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	2208
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	6
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Drosophila melanogaster	GSM286604-9792	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	1
----------------------GGGGTAAAACTGTACGTTATAT 	8
----------------------GGGGTAAAACTGTACGTTATATG 	68
-------------------------------CTGTACGTTATATGTGCCC 	3
---------------------------------------------TGCCCTTCTGTGATATTCA 	11
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	5
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	17
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	5
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	18
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	119
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Drosophila melanogaster	GSM385744-16261	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTAT 	1
---------------------GGGGGTAAAACTGTACGTTATAT 	1
---------------------GGGGGTAAAACTGTACGTTATA 	1
----------------------GGGGTAAAACTGTACGTTATA 	37
----------------------GGGGTAAAACTGTACGTTATAT 	30
----------------------GGGGTAAAACTGTACGTTATATG 	21
----------------------GGGGTAAAACTGTACGTTAT 	16
----------------------GGGGTAAAACTGTACGTTA 	4
---------------------------------------------TGCCCTTCTGTGATATTCA 	6
---------------------------------------------------------------ATAAGCGTATAGCTTTTCCCCTT 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	112
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	110
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAA 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	614
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	30
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	5463
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	15
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	1
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	3
--------------------------------------------------------------------CGTATAGCTTTTCCCCTTA 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Drosophila melanogaster	GSM385748-16264	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTAT 	3
---------------------GGGGGTAAAACTGTACGTTATAT 	4
---------------------GGGGGTAAAACTGTACGTTA 	1
---------------------GGGGGTAAAACTGTACGTTATA 	2
----------------------GGGGTAAAACTGTACGTTATATG 	48
----------------------GGGGTAAAACTGTACGTTA 	11
----------------------GGGGTAAAACTGTACGTTATA 	79
----------------------GGGGTAAAACTGTACGTTATAT 	51
----------------------GGGGTAAAACTGTACGTTAT 	33
---------------------------------------------TGCCCTTCTGTGATATTCA 	11
---------------------------------------------------------------ATAAGCGTATAGCTTTTCCCCTT 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	216
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAA 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	240
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	1231
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	55
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAA 	7
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	10964
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	2
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	27
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	7
------------------------------------------------------------------AGCGTATAGCTTTTCCCCT 	1
-------------------------------------------------------------------GCGTATAGCTTTTCCCCTT 	1
--------------------------------------------------------------------CGTATAGCTTTTCCCCTTA 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Drosophila melanogaster	GSM399110-16285	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATATG 	4
----------------------GGGGTAAAACTGTACGTTATAT 	11
----------------------GGGGTAAAACTGTACGTTAT 	5
----------------------GGGGTAAAACTGTACGTTATATG 	192
---------------------------------------------TGCCCTTCTGTGATATTCA 	32
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTAAA 	3
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	8
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	2
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	210
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	1468
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	22
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	2
------------------------------------------------------------------AGCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Drosophila melanogaster	GSM466492_dcr-2_homozygotes_untreated	TAAGCGTATAGCTTTTCCCCTT	GGGGTAAAACTGTACGTTATATG	down	2	1

Secondary structure

ACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCA
---------------------GGGGGTAAAACTGTACGTTATAT 	1
---------------------GGGGGTAAAACTGTACGTTATATG 	1
----------------------GGGGTAAAACTGTACGTTATATG 	81
----------------------GGGGTAAAACTGTACGTTATAT 	5
----------------------GGGGTAAAACTGTACGTTATA 	1
-----------------------GGGTAAAACTGTACGTTAT 	1
-----------------------GGGTAAAACTGTACGTTATATG 	1
------------------------GGTAAAACTGTACGTTATATG 	1
---------------------------------------------TGCCCTTCTGTGATATTCA 	7
---------------------------------------------------------------ATAAGCGTATAGCTTTTCCCCTT 	1
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCT 	93
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTTA 	12
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCC 	13
----------------------------------------------------------------TAAGCGTATAGCTTTTCCCCTT 	710
----------------------------------------------------------------TAAGCGTATAGCTTTTCCC 	4
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCTT 	12
-----------------------------------------------------------------AAGCGTATAGCTTTTCCCCT 	3
-------------------------------------------------------------------GCGTATAGCTTTTCCCCTT 	1

Overlaps with: MNEST036505 MNEST036506
Overlaps with miRBase pre-miRNAs: dme-mir-965
HuntMi prediction: true miRNA