miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAAGCTCAATTAACTGTTTGCA

selected species: Drosophila melanogaster



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
---GGCGAGGATGACAACGAAT 	1
-----------------------------------------------------CTTGGTTCTTGGACTCTTGA 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	2
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	18
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTG 	1

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	2
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	5
--------------------------------------------------------------------------AAGCTCAATTAACTGTTTGC 	1

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM466487_wt_total TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------GTAAGCAGTGTTTGAACTCG 	1
-------------------------------GTAAGCAGTGTTTGAACTCGATCT 	1
-------------------------------GTAAGCAGTGTTTGAACTCGAT 	1
------------------------------------------------------------------------ATAAGCTCAATTAACTGTTTGCA 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	18
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	42
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTG 	4
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	116
--------------------------------------------------------------------------AAGCTCAATTAACTGTTTGCA 	3
---------------------------------------------------------------------------AGCTCAATTAACTGTTTGC 	1

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------GTAAGCAGTGTTTGAACTC 	2
-------------------------------GTAAGCAGTGTTTGAACTCGA 	3
-------------------------------------------------------------TTGGACTCTTGATAAGCTCAA 	2
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	8
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	95
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTG 	4
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	115
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTT 	1
--------------------------------------------------------------------------AAGCTCAATTAACTGTTTGCA 	3

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM371638-15389 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------GTAAGCAGTGTTTGAACTCGATC 	7
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTG 	3
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	9

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Drosophila melanogaster GSM343833-15151 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------GTAAGCAGTGTTTGAACTCGAT 	2
-------------------------------GTAAGCAGTGTTTGAACTCGATC 	2
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	7

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Drosophila melanogaster GSM343832-15149 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------GTAAGCAGTGTTTGAACTCGATC 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	7
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	10
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTG 	1

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Drosophila melanogaster GSM399100-5263 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------GTAAGCAGTGTTTGAACTCG 	1
-------------------------------GTAAGCAGTGTTTGAACTCGATC 	1
------------------------------------------------------------------------ATAAGCTCAATTAACTGTTTGCA 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	11
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	3
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	18
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTT 	1
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTG 	3

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Drosophila melanogaster GSM360260-14326 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	2
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	5

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Drosophila melanogaster GSM322543-14323 TAAGCTCAATTAACTGTTTGCA TAAGCAGTGTTTGAACTCGATC down 4 2


Secondary structure

CGTGGCGAGGATGACAACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCTCGGAGAATCGACG
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCAG 	12
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGC 	21
-------------------------------------------------------------------------TAAGCTCAATTAACTGTTTGCA 	66

Overlaps with: MNEST036589 MNEST036590
Overlaps with miRBase pre-miRNAs: dme-mir-1007
HuntMi prediction: true miRNA