miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAAGGCACGCGGTGAATGCCA

selected species: Caenorhabditis elegans



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
-------------GCATGCACCCTAGTGACTTTAGT 	72
-------------GCATGCACCCTAGTGACTTTAG 	10
-------------GCATGCACCCTAGTGACTTTAGTG 	4
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	273
--------------------------------------------------------TAAGGCACGCGGTGAATGCC 	2
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	1
--------------------------------------------------------TAAGGCACGCGGTGAATGCCAC 	1
---------------------------------------------------------AAGGCACGCGGTGAATGCCA 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
-------------GCATGCACCCTAGTGACTTTAGT 	36
-------------GCATGCACCCTAGTGACTTTAGTG 	1
-------------GCATGCACCCTAGTGACTTTAG 	1
-------------------------------------------------------CTAAGGCACGCGGTGAATGCCA 	2
-------------------------------------------------------CTAAGGCACGCGGTGAATG 	1
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	287
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	6
--------------------------------------------------------TAAGGCACGCGGTGAATGCC 	1
---------------------------------------------------------AAGGCACGCGGTGAATGCCA 	2
----------------------------------------------------------AGGCACGCGGTGAATGCCA 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
-------------GCATGCACCCTAGTGACTTTAGT 	10
-------------------------------------------------------CTAAGGCACGCGGTGAATGCCA 	1
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	151
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	12
--------------------------------------------------------TAAGGCACGCGGTGAATGCC 	3
---------------------------------------------------------AAGGCACGCGGTGAATGCCA 	5
----------------------------------------------------------AGGCACGCGGTGAATGCCA 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
-------------GCATGCACCCTAGTGACTTTAGT 	3
-------------------------------------------------------CTAAGGCACGCGGTGAATG 	1
--------------------------------------------------------TAAGGCACGCGGTGAATGCCAC 	17
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	677
--------------------------------------------------------TAAGGCACGCGGTGAATGCC 	26
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	117
---------------------------------------------------------AAGGCACGCGGTGAATGCCA 	23
---------------------------------------------------------AAGGCACGCGGTGAATGCCAC 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM427297-5679 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	13
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297751-9445 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
-------------GCATGCACCCTAGTGACTTTAG 	1
-------------GCATGCACCCTAGTGACTTTAGT 	2
-------------------------------------------------------CTAAGGCACGCGGTGAATGCCA 	4
--------------------------------------------------------TAAGGCACGCGGTGAATGCC 	25
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	4
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	3208
---------------------------------------------------------AAGGCACGCGGTGAATGCCA 	3
----------------------------------------------------------AGGCACGCGGTGAATGCCA 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Caenorhabditis elegans GSM297752-9446 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
-----------TGGCATGCACCCTAGTGACTTTAGT 	1
-------------GCATGCACCCTAGTGACTTTAGT 	5
-------------------------------------------------------CTAAGGCACGCGGTGAATGCCA 	1
--------------------------------------------------------TAAGGCACGCGGTGAATGCCAC 	1
--------------------------------------------------------TAAGGCACGCGGTGAATGCC 	14
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	2
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	2909
---------------------------------------------------------AAGGCACGCGGTGAATGCCA 	4
----------------------------------------------------------AGGCACGCGGTGAATGCCA 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Caenorhabditis elegans GSM427301-5681 TAAGGCACGCGGTGAATGCCA GCATGCACCCTAGTGACTTTAGT down 3 2


Secondary structure

CACTTGTCATCTGGCATGCACCCTAGTGACTTTAGTGGACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCCATG
--------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	5
--------------------------------------------------------TAAGGCACGCGGTGAATGC 	1

Overlaps with: MNEST038329
Overlaps with miRBase pre-miRNAs: cel-mir-124
HuntMi prediction: true miRNA