miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAAGGCACGCGGTGAATGCCAA

selected species: Danio rerio



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540646 TAAGGCACGCGGTGAATGCCAA TGTGTTCACAGTGGACCTTGAT down 4 0


Secondary structure

GGAAACTTGGGTTTTTGCTCTTTGTGTTCACAGTGGACCTTGATTTAATTTCAATACAATTAAGGCACGCGGTGAATGCCAAGAGAGAAGCCAACAGCAGC
----------------------TGTGTTCACAGTGGACCTTGATT 	33
----------------------TGTGTTCACAGTGGACCTTGAT 	111
----------------------TGTGTTCACAGTGGACCTTGA 	7
-----------------------GTGTTCACAGTGGACCTTGAT 	5
-----------------------GTGTTCACAGTGGACCTTGA 	2
----------------------------------------------------------ATTAAGGCACGCGGTGAATGCC 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCC 	44
-----------------------------------------------------------TTAAGGCACGCGGTGAATGC 	6
-----------------------------------------------------------TTAAGGCACGCGGTGAATG 	2
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAAG 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAA 	59
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCA 	295
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAGA 	2
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAG 	3
------------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	783
------------------------------------------------------------TAAGGCACGCGGTGAATGC 	23
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAA 	1101
------------------------------------------------------------TAAGGCACGCGGTGAATGCC 	50
-------------------------------------------------------------AAGGCACGCGGTGAATGCCAA 	9
-------------------------------------------------------------AAGGCACGCGGTGAATGCCA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCAA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCA 	1


Overlaps with: MNEST034274
Overlaps with miRBase pre-miRNAs: dre-mir-124-4
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540646 TAAGGCACGCGGTGAATGCCAA CGTGTTCACAGTGGACCTTGAT down 5 0


Secondary structure

TGCATTTTAGGCTCTCGCTGTACGTGTTCACAGTGGACCTTGATTTATTGTATTTCAATTAAGGCACGCGGTGAATGCCAACAGCACAGCCATTTACACT
----------------------CGTGTTCACAGTGGACCTTGAT 	3
----------------------CGTGTTCACAGTGGACCTTGA 	1
----------------------CGTGTTCACAGTGGACCTTGATT 	2
-----------------------GTGTTCACAGTGGACCTTGAT 	5
-----------------------GTGTTCACAGTGGACCTTGA 	2
---------------------------------------------------------ATTAAGGCACGCGGTGAATGCC 	1
----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAAC 	1
----------------------------------------------------------TTAAGGCACGCGGTGAATGCC 	44
----------------------------------------------------------TTAAGGCACGCGGTGAATGC 	6
----------------------------------------------------------TTAAGGCACGCGGTGAATG 	2
----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAA 	59
----------------------------------------------------------TTAAGGCACGCGGTGAATGCCA 	295
-----------------------------------------------------------TAAGGCACGCGGTGAATGCCAACA 	3
-----------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	783
-----------------------------------------------------------TAAGGCACGCGGTGAATGC 	23
-----------------------------------------------------------TAAGGCACGCGGTGAATGCCAA 	1101
-----------------------------------------------------------TAAGGCACGCGGTGAATGCC 	50
------------------------------------------------------------AAGGCACGCGGTGAATGCCAA 	9
------------------------------------------------------------AAGGCACGCGGTGAATGCCA 	1
-------------------------------------------------------------AGGCACGCGGTGAATGCCAA 	1
-------------------------------------------------------------AGGCACGCGGTGAATGCCA 	1


Overlaps with: MNEST034271
Overlaps with miRBase pre-miRNAs: dre-mir-124-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540646 TAAGGCACGCGGTGAATGCCAA CGTGTTCACAGCGGACCTTGAT down 4 0


Secondary structure

CCTGCTTTTCTTCGTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAGAGATGG
------------CGTGTTCACAGCGGACCTTGATT 	192
------------CGTGTTCACAGCGGACCTTGAT 	400
------------CGTGTTCACAGCGGACCTTG 	2
------------CGTGTTCACAGCGGACCTTGA 	143
------------CGTGTTCACAGCGGACCTTGATTT 	1
-------------GTGTTCACAGCGGACCTTGAT 	2
-------------GTGTTCACAGCGGACCTTGATT 	1
--------------TGTTCACAGCGGACCTTGATT 	6
-------------------------------------------------ATTAAGGCACGCGGTGAATGCC 	1
--------------------------------------------------TTAAGGCACGCGGTGAATGCC 	44
--------------------------------------------------TTAAGGCACGCGGTGAATGC 	6
--------------------------------------------------TTAAGGCACGCGGTGAATG 	2
--------------------------------------------------TTAAGGCACGCGGTGAATGCCAAG 	1
--------------------------------------------------TTAAGGCACGCGGTGAATGCCAA 	59
--------------------------------------------------TTAAGGCACGCGGTGAATGCCA 	295
---------------------------------------------------TAAGGCACGCGGTGAATGCCAAGA 	2
---------------------------------------------------TAAGGCACGCGGTGAATGCCAAG 	3
---------------------------------------------------TAAGGCACGCGGTGAATGCCA 	783
---------------------------------------------------TAAGGCACGCGGTGAATGC 	23
---------------------------------------------------TAAGGCACGCGGTGAATGCCAA 	1101
---------------------------------------------------TAAGGCACGCGGTGAATGCC 	50
----------------------------------------------------AAGGCACGCGGTGAATGCCAA 	9
----------------------------------------------------AAGGCACGCGGTGAATGCCA 	1
-----------------------------------------------------AGGCACGCGGTGAATGCCAA 	1
-----------------------------------------------------AGGCACGCGGTGAATGCCA 	1


Overlaps with: MNEST009654
Overlaps with miRBase pre-miRNAs: dre-mir-124-2 cfa-mir-124-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540646 TAAGGCACGCGGTGAATGCCAA CGTGTTCACAGCGGACCTTGAT down 5 0


Secondary structure

TTCTTTTTGAGTTCTCGCTCTGCGTGTTCACAGCGGACCTTGATTTAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAGAAGAATCTCTCCAGCA
TTCTTTTTGAGTTCTCGCTCTG 	1
-TCTTTTTGAGTTCTCGCTCTG 	17
---TTTTTGAGTTCTCGCTCTG 	2
----------------------CGTGTTCACAGCGGACCTTGATT 	192
----------------------CGTGTTCACAGCGGACCTTGAT 	400
----------------------CGTGTTCACAGCGGACCTTG 	2
----------------------CGTGTTCACAGCGGACCTTGA 	143
----------------------CGTGTTCACAGCGGACCTTGATTT 	1
-----------------------GTGTTCACAGCGGACCTTGAT 	2
-----------------------GTGTTCACAGCGGACCTTGATT 	1
------------------------TGTTCACAGCGGACCTTGATT 	6
----------------------------------------------------------ATTAAGGCACGCGGTGAATGCC 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCC 	44
-----------------------------------------------------------TTAAGGCACGCGGTGAATGC 	6
-----------------------------------------------------------TTAAGGCACGCGGTGAATG 	2
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAAG 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAA 	59
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCA 	295
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAGA 	2
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAG 	3
------------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	783
------------------------------------------------------------TAAGGCACGCGGTGAATGC 	23
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAA 	1101
------------------------------------------------------------TAAGGCACGCGGTGAATGCC 	50
-------------------------------------------------------------AAGGCACGCGGTGAATGCCAA 	9
-------------------------------------------------------------AAGGCACGCGGTGAATGCCA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCAA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCA 	1


Overlaps with: MNEST034275
Overlaps with miRBase pre-miRNAs: pol-mir-124 cfa-mir-124-3 dre-mir-124-5
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TAAGGCACGCGGTGAATGCCAA CGTGTTCACAGCGGACCTTGAT down 5 0


Secondary structure

TGGGATTTCAGACTCTGGCTTTCCGTGTTCACAGCGGACCTTGATTTAATGTCTTACAATTAAGGCACGCGGTGAATGCCAAGAGCGGAGCCTTTTAACATC
-GGGATTTCAGACTCTGGCTTTC 	3
-----------------------CGTGTTCACAGCGGACCTTGATT 	192
-----------------------CGTGTTCACAGCGGACCTTGAT 	400
-----------------------CGTGTTCACAGCGGACCTTG 	2
-----------------------CGTGTTCACAGCGGACCTTGA 	143
-----------------------CGTGTTCACAGCGGACCTTGATTT 	1
------------------------GTGTTCACAGCGGACCTTGAT 	2
------------------------GTGTTCACAGCGGACCTTGATT 	1
-------------------------TGTTCACAGCGGACCTTGATT 	6
----------------------------------------------------------ATTAAGGCACGCGGTGAATGCC 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCC 	44
-----------------------------------------------------------TTAAGGCACGCGGTGAATGC 	6
-----------------------------------------------------------TTAAGGCACGCGGTGAATG 	2
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAAG 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAA 	59
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCA 	295
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAGA 	2
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAG 	3
------------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	783
------------------------------------------------------------TAAGGCACGCGGTGAATGC 	23
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAA 	1101
------------------------------------------------------------TAAGGCACGCGGTGAATGCC 	50
-------------------------------------------------------------AAGGCACGCGGTGAATGCCAA 	9
-------------------------------------------------------------AAGGCACGCGGTGAATGCCA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCAA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCA 	1


Overlaps with: MNEST034273
Overlaps with miRBase pre-miRNAs: dre-mir-124-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Danio rerio GSM540646 TAAGGCACGCGGTGAATGCCAA CGTGTTCACGGCGGACCTTGAT down 5 0


Secondary structure

GTGACACAGGCCCGCCACTCTGCGTGTTCACGGCGGACCTTGATTTAATATCCATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGGGTCTTAAAACGA
----------------------CGTGTTCACGGCGGACCTTG 	3
----------------------CGTGTTCACGGCGGACCTTGAT 	384
----------------------CGTGTTCACGGCGGACCTTGATT 	116
----------------------CGTGTTCACGGCGGACCTTGA 	140
-----------------------GTGTTCACGGCGGACCTTGAT 	3
-----------------------GTGTTCACGGCGGACCTTGA 	1
----------------------------------------------------------ATTAAGGCACGCGGTGAATGCC 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCC 	44
-----------------------------------------------------------TTAAGGCACGCGGTGAATGC 	6
-----------------------------------------------------------TTAAGGCACGCGGTGAATG 	2
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAAG 	1
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCAA 	59
-----------------------------------------------------------TTAAGGCACGCGGTGAATGCCA 	295
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAGA 	2
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAAG 	3
------------------------------------------------------------TAAGGCACGCGGTGAATGCCA 	783
------------------------------------------------------------TAAGGCACGCGGTGAATGC 	23
------------------------------------------------------------TAAGGCACGCGGTGAATGCCAA 	1101
------------------------------------------------------------TAAGGCACGCGGTGAATGCC 	50
-------------------------------------------------------------AAGGCACGCGGTGAATGCCAA 	9
-------------------------------------------------------------AAGGCACGCGGTGAATGCCA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCAA 	1
--------------------------------------------------------------AGGCACGCGGTGAATGCCA 	1


Overlaps with: MNEST034276
Overlaps with miRBase pre-miRNAs: dre-mir-124-6
HuntMi prediction: true miRNA