miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAAGGTGCATCTAGTGCAGTT

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TAAGGTGCATCTAGTGCAGTT CTGCCCTAAATGCTCCTTCTGGC up 4 2


Secondary structure

CCCTACTCGTGGTCCTTGTGTTAAGGTGCATCTAGTGCAGTTAGTGACGTAGCGTAGAATCTACTGCCCTAAATGCTCCTTCTGGCACAAGCTGCTGCCTGCAC
---------------------TAAGGTGCATCTAGTGCAGTTAG 	3
---------------------TAAGGTGCATCTAGTGCAGTTAGT 	1
---------------------TAAGGTGCATCTAGTGCAGTT 	61
---------------------TAAGGTGCATCTAGTGCAGTTA 	26
---------------------TAAGGTGCATCTAGTGCAGT 	2
----------------------AAGGTGCATCTAGTGCAGTTA 	1
------------------------------------------AGTGACGTAGCGTAGAATCTAC 	13
-------------------------------------------------------------TACTGCCCTAAATGCTCCTTCTGGC 	3
-------------------------------------------------------------TACTGCCCTAAATGCTCCTTCTGG 	3
--------------------------------------------------------------ACTGCCCTAAATGCTCCTTCTGGCA 	1
--------------------------------------------------------------ACTGCCCTAAATGCTCCTTCTGGC 	1

Overlaps with: MNEST006803
Overlaps with miRBase pre-miRNAs: gga-mir-18b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TAAGGTGCATCTAGTGCAGTT CTGCCCTAAATGCTCCTTCTGGC up 4 2


Secondary structure

CCCTACTCGTGGTCCTTGTGTTAAGGTGCATCTAGTGCAGTTAGTGACGTAGCGTAGAATCTACTGCCCTAAATGCTCCTTCTGGCACAAGCTGCTGCCTGCAC
---------------------TAAGGTGCATCTAGTGCAG 	1
---------------------TAAGGTGCATCTAGTGCAGTTA 	68
---------------------TAAGGTGCATCTAGTGCAGTTAG 	8
---------------------TAAGGTGCATCTAGTGCAGTT 	208
---------------------TAAGGTGCATCTAGTGCAGT 	21
------------------------------------------AGTGACGTAGCGTAGAATCTAC 	11
-------------------------------------------------------------TACTGCCCTAAATGCTCCTTCT 	3
-------------------------------------------------------------TACTGCCCTAAATGCTCCTTCTGGC 	1

Overlaps with: MNEST006803
Overlaps with miRBase pre-miRNAs: gga-mir-18b
HuntMi prediction: true miRNA