miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAAGGTGCATTTAGTGCAGATA

selected species: Danio rerio



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540643 TAAGGTGCATTTAGTGCAGATA ACTGCCCTAAGTGCCCCTTCTGGC up 5 2


Secondary structure

ACTGCTTATGCTAAGGTGCATTTAGTGCAGATAGTGAAATAGACTAGCACCTACTGCCCTAAGTGCCCCTTCTGGCATAAGGGG
----------CTAAGGTGCATTTAGTGCAGATA 	1
----------CTAAGGTGCATTTAGTGCAGA 	1
-----------TAAGGTGCATTTAGTGCAGATAG 	102
-----------TAAGGTGCATTTAGTGCAGAT 	133
-----------TAAGGTGCATTTAGTGCAGA 	59
-----------TAAGGTGCATTTAGTGCAG 	2
-----------TAAGGTGCATTTAGTGCAGATAGT 	5
-----------TAAGGTGCATTTAGTGCAGATA 	371
-------------AGGTGCATTTAGTGCAGATAGTGA 	1
----------------------------------------------------ACTGCCCTAAGTGCCCCTTCTGGC 	1


Overlaps with: MNEST034212
Overlaps with miRBase pre-miRNAs: dre-mir-18b
HuntMi prediction: true miRNA