miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAAGTGCTTCTCTTTGGGGTAG

selected species: Danio rerio



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TAAGTGCTTCTCTTTGGGGTAG ACTTCAAACAGGAGCATTGATT down 4 0


Secondary structure

CACATTAAGATCACTTCAAACAGGAGCATTGATTTGTCCTTTGTTCATAAGTGCTTCTCTTTGGGGTAGTTTTAATAA
-----------CACTTCAAACAGGAGCATTGATTT 	1
-----------CACTTCAAACAGGAGCATTGAT 	1
------------ACTTCAAACAGGAGCATTGATT 	1
-----------------------------------------TGTTCATAAGTGCTTCTCTTTG 	1
--------------------------------------------TCATAAGTGCTTCTCTTTGGG 	2
---------------------------------------------CATAAGTGCTTCTCTTTGGGGTAG 	1
----------------------------------------------ATAAGTGCTTCTCTTTGGGGTAG 	1
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAGT 	2
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAG 	105
------------------------------------------------AAGTGCTTCTCTTTGGGGTAG 	6
-------------------------------------------------AGTGCTTCTCTTTGGGGTAG 	1


Overlaps with: MNEST034448
Overlaps with miRBase pre-miRNAs: dre-mir-430c-12 dre-mir-430c-5 dre-mir-430c-2 dre-mir-430c-13 dre-mir-430c-11 dre-mir-430c-3 dre-mir-430c-9 dre-mir-430c-6 dre-mir-430c-8 dre-mir-430c-17 dre-mir-430c-4 dre-mir-430c-1 dre-mir-430c-14 dre-mir-430c-15 dre-mir-430c-16 dre-mir-430c-10 dre-mir-430c-7 dre-mir-430c-18
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TAAGTGCTTCTCTTTGGGGTAG ACTTCAAACAGGAGCATTGATT down 4 0


Secondary structure

CACATTAAGATCACTTCAAACAGGAGCATTGATTTGTCCTTTGTTCATAAGTGCTTCTCTTTGGGGTAGTTTTAATAA
----------TCACTTCAAACAGGAGCATTGA 	1
-----------CACTTCAAACAGGAGCATTGA 	6
-----------CACTTCAAACAGGAGCATTGAT 	6
----------------------------------------------ATAAGTGCTTCTCTTTGGGGTAG 	2
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAGT 	25
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTA 	61
-----------------------------------------------TAAGTGCTTCTCTTTGGGGT 	32
-----------------------------------------------TAAGTGCTTCTCTTTGGGG 	3
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAG 	14638
------------------------------------------------AAGTGCTTCTCTTTGGGGTAGTTT 	1
------------------------------------------------AAGTGCTTCTCTTTGGGGTAGT 	12
------------------------------------------------AAGTGCTTCTCTTTGGGGTAG 	652
------------------------------------------------AAGTGCTTCTCTTTGGGGTAGTT 	1
-------------------------------------------------AGTGCTTCTCTTTGGGGTAG 	23


Overlaps with: MNEST034448
Overlaps with miRBase pre-miRNAs: dre-mir-430c-12 dre-mir-430c-5 dre-mir-430c-2 dre-mir-430c-13 dre-mir-430c-11 dre-mir-430c-3 dre-mir-430c-9 dre-mir-430c-6 dre-mir-430c-8 dre-mir-430c-17 dre-mir-430c-4 dre-mir-430c-1 dre-mir-430c-14 dre-mir-430c-15 dre-mir-430c-16 dre-mir-430c-10 dre-mir-430c-7 dre-mir-430c-18
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 TAAGTGCTTCTCTTTGGGGTAG ACTTCAAACAGGAGCATTGATT down 4 0


Secondary structure

CACATTAAGATCACTTCAAACAGGAGCATTGATTTGTCCTTTGTTCATAAGTGCTTCTCTTTGGGGTAGTTTTAATAA
----------TCACTTCAAACAGGAGCATTGA 	3
----------TCACTTCAAACAGGAGCATTGAT 	1
-----------CACTTCAAACAGGAGCATTGA 	22
-----------CACTTCAAACAGGAGCATTG 	3
-----------CACTTCAAACAGGAGCATTGATT 	2
-----------CACTTCAAACAGGAGCATTGAT 	89
------------ACTTCAAACAGGAGCATTGATT 	4
------------ACTTCAAACAGGAGCATTGAT 	1
----------------------------------------------ATAAGTGCTTCTCTTTGGGGTAG 	2
----------------------------------------------ATAAGTGCTTCTCTTTGGGGTA 	1
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAGTT 	22
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAGT 	273
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTA 	165
-----------------------------------------------TAAGTGCTTCTCTTTGGGGT 	30
-----------------------------------------------TAAGTGCTTCTCTTTGGGG 	8
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAG 	5168
------------------------------------------------AAGTGCTTCTCTTTGGGGTAGT 	128
------------------------------------------------AAGTGCTTCTCTTTGGGGTAG 	222
------------------------------------------------AAGTGCTTCTCTTTGGGGTA 	2
------------------------------------------------AAGTGCTTCTCTTTGGGGTAGTT 	16
------------------------------------------------AAGTGCTTCTCTTTGGGGT 	1
-------------------------------------------------AGTGCTTCTCTTTGGGGTAGT 	3


Overlaps with: MNEST034448
Overlaps with miRBase pre-miRNAs: dre-mir-430c-12 dre-mir-430c-5 dre-mir-430c-2 dre-mir-430c-13 dre-mir-430c-11 dre-mir-430c-3 dre-mir-430c-9 dre-mir-430c-6 dre-mir-430c-8 dre-mir-430c-17 dre-mir-430c-4 dre-mir-430c-1 dre-mir-430c-14 dre-mir-430c-15 dre-mir-430c-16 dre-mir-430c-10 dre-mir-430c-7 dre-mir-430c-18
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540646 TAAGTGCTTCTCTTTGGGGTAG ACTTCAAACAGGAGCATTGATT down 4 0


Secondary structure

CACATTAAGATCACTTCAAACAGGAGCATTGATTTGTCCTTTGTTCATAAGTGCTTCTCTTTGGGGTAGTTTTAATAA
----------TCACTTCAAACAGGAGCATTGA 	17
----------TCACTTCAAACAGGAGCATTG 	2
-----------CACTTCAAACAGGAGCATTGATT 	7
-----------CACTTCAAACAGGAGCATTGAT 	201
-----------CACTTCAAACAGGAGCATTGA 	170
------------ACTTCAAACAGGAGCATTGATTTGTC 	1
------------ACTTCAAACAGGAGCATTGATTT 	3
------------ACTTCAAACAGGAGCATTGAT 	1
---------------------------------------TTTGTTCATAAGTGCTTCTCTTTG 	1
----------------------------------------TTGTTCATAAGTGCTTCTCTTTGGG 	2
----------------------------------------------ATAAGTGCTTCTCTTTGGGGTAG 	2
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAGT 	261
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTA 	392
-----------------------------------------------TAAGTGCTTCTCTTTGGGGT 	102
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAGTT 	17
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAGTTT 	1
-----------------------------------------------TAAGTGCTTCTCTTTGGGGTAG 	128409
-----------------------------------------------TAAGTGCTTCTCTTTGGGG 	2
------------------------------------------------AAGTGCTTCTCTTTGGGGTAG 	3638
------------------------------------------------AAGTGCTTCTCTTTGGGGTA 	6
------------------------------------------------AAGTGCTTCTCTTTGGGGTAGTT 	3
------------------------------------------------AAGTGCTTCTCTTTGGGGTAGT 	84
------------------------------------------------AAGTGCTTCTCTTTGGGGT 	1
-------------------------------------------------AGTGCTTCTCTTTGGGGTAGT 	1
-------------------------------------------------AGTGCTTCTCTTTGGGGTAG 	53
--------------------------------------------------GTGCTTCTCTTTGGGGTAG 	1


Overlaps with: MNEST034448
Overlaps with miRBase pre-miRNAs: dre-mir-430c-12 dre-mir-430c-5 dre-mir-430c-2 dre-mir-430c-13 dre-mir-430c-11 dre-mir-430c-3 dre-mir-430c-9 dre-mir-430c-6 dre-mir-430c-8 dre-mir-430c-17 dre-mir-430c-4 dre-mir-430c-1 dre-mir-430c-14 dre-mir-430c-15 dre-mir-430c-16 dre-mir-430c-10 dre-mir-430c-7 dre-mir-430c-18
HuntMi prediction: true miRNA