miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAATACTGTCTGGTAAAACCGT

selected species: Homo sapiens



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM651905 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
---------------------------------------------TCTAATACTGTCTGGTAAAACC 	1
----------------------------------------------CTAATACTGTCTGGTAAAA 	12
----------------------------------------------CTAATACTGTCTGGTAAAACCGT 	6
----------------------------------------------CTAATACTGTCTGGTAAAACCG 	6
----------------------------------------------CTAATACTGTCTGGTAAAAC 	4
----------------------------------------------CTAATACTGTCTGGTAAAACC 	1
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	984
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	340
-----------------------------------------------TAATACTGTCTGGTAAAACC 	117
-----------------------------------------------TAATACTGTCTGGTAAAAC 	148
------------------------------------------------AATACTGTCTGGTAAAACCGT 	16
------------------------------------------------AATACTGTCTGGTAAAACC 	14
------------------------------------------------AATACTGTCTGGTAAAACCG 	7

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM565979-9647 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
----------------------------------------------CTAATACTGTCTGGTAAAACCGT 	2
----------------------------------------------CTAATACTGTCTGGTAAAACCG 	1
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	113
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	26
-----------------------------------------------TAATACTGTCTGGTAAAAC 	1
------------------------------------------------AATACTGTCTGGTAAAACCGT 	1

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM531974 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
----------------------------------------------CTAATACTGTCTGGTAAAACCG 	1
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	33
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	15

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM565978-9532 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
----------------------------------------------CTAATACTGTCTGGTAAAACCGT 	1
----------------------------------------------CTAATACTGTCTGGTAAAACCG 	1
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	160
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	16
------------------------------------------------AATACTGTCTGGTAAAACCGT 	1

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM651906 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
---------------------------------------------TCTAATACTGTCTGGTAAA 	1
---------------------------------------------TCTAATACTGTCTGGTAAAACC 	1
---------------------------------------------TCTAATACTGTCTGGTAAAAC 	1
----------------------------------------------CTAATACTGTCTGGTAAAACCGT 	9
----------------------------------------------CTAATACTGTCTGGTAAAA 	13
----------------------------------------------CTAATACTGTCTGGTAAAACCG 	8
----------------------------------------------CTAATACTGTCTGGTAAAAC 	3
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	994
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	509
-----------------------------------------------TAATACTGTCTGGTAAAACC 	131
-----------------------------------------------TAATACTGTCTGGTAAAAC 	187
------------------------------------------------AATACTGTCTGGTAAAACCGT 	30
------------------------------------------------AATACTGTCTGGTAAAACCG 	13
------------------------------------------------AATACTGTCTGGTAAAACC 	2
-------------------------------------------------ATACTGTCTGGTAAAACCGT 	2

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531982 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
----------------------------------------------CTAATACTGTCTGGTAAAACCGT 	2
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	137
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	12
-----------------------------------------------TAATACTGTCTGGTAAAAC 	5
-----------------------------------------------TAATACTGTCTGGTAAAACC 	1
------------------------------------------------AATACTGTCTGGTAAAACCGT 	3
-------------------------------------------------ATACTGTCTGGTAAAACCGT 	1

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM531978 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
----------------------------------------------CTAATACTGTCTGGTAAAACCGT 	3
----------------------------------------------CTAATACTGTCTGGTAAAACCG 	2
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	199
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	97
-----------------------------------------------TAATACTGTCTGGTAAAAC 	3
-----------------------------------------------TAATACTGTCTGGTAAAACC 	2
------------------------------------------------AATACTGTCTGGTAAAACCGT 	3
-------------------------------------------------ATACTGTCTGGTAAAACCGT 	4

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM531975 TAATACTGTCTGGTAAAACCGT GTCTTACCAGACATGGTTAGA down 3 1


Secondary structure

CGGCCGATGGGCGTCTTACCAGACATGGTTAGACCTGGCCCTCTGTCTAATACTGTCTGGTAAAACCGTCCATCCGCT
----------------------------------------------CTAATACTGTCTGGTAAAACCGT 	1
-----------------------------------------------TAATACTGTCTGGTAAAACCGT 	78
-----------------------------------------------TAATACTGTCTGGTAAAACCG 	27
-----------------------------------------------TAATACTGTCTGGTAAAACC 	7
-----------------------------------------------TAATACTGTCTGGTAAAAC 	3

Overlaps with: MNEST028649
Overlaps with miRBase pre-miRNAs: hsa-mir-429
HuntMi prediction: true miRNA