miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAATGCCCCTAAAAATCCTTAT

selected species: Sus scrofa



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636849 TAATGCCCCTAAAAATCCTTAT GAGGGACTTTCAGGGGCAGCTGTG down 3 2


Secondary structure

GTTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGACTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAGTGTTCATC
-----------------------AGGGACTTTCAGGGGCAGCTGTG 	4
--------------------------------------------------------------TAATGCCCCTAAAAATCCTTATT 	3
--------------------------------------------------------------TAATGCCCCTAAAAATCCTT 	5
--------------------------------------------------------------TAATGCCCCTAAAAATCCTTAT 	22
--------------------------------------------------------------TAATGCCCCTAAAAATCCTTA 	6

Overlaps with: MNEST027146
Overlaps with miRBase pre-miRNAs: eca-mir-365-1 ssc-mir-365-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636848 TAATGCCCCTAAAAATCCTTAT GAGGGACTTTTGGGGGCAGATG down 2 2


Secondary structure

GGTTGGTTACCGCAGGGAAAATGAGGGACTTTTGGGGGCAGATGTGTTTCCATTCCACTATCATAATGCCCCTAAAAATCCTTATTGCTCTTGCAGTATTCCTC
---------------------TGAGGGACTTTTGGGGGCAGATG 	2
---------------------TGAGGGACTTTTGGGGGCAGAT 	1
----------------------GAGGGACTTTTGGGGGCAGATGT 	2
-----------------------AGGGACTTTTGGGGGCAGATGTGT 	4
-----------------------AGGGACTTTTGGGGGCAGATGT 	4
-----------------------AGGGACTTTTGGGGGCAGATGTG 	8
------------------------GGGACTTTTGGGGGCAGATGTG 	1
---------------------------------------------------------------TAATGCCCCTAAAAATCCTTAT 	24
---------------------------------------------------------------TAATGCCCCTAAAAATCCTTA 	9
---------------------------------------------------------------TAATGCCCCTAAAAATCCTT 	6
---------------------------------------------------------------TAATGCCCCTAAAAATCCTTATT 	5
-----------------------------------------------------------------ATGCCCCTAAAAATCCTTAT 	1

Overlaps with: MNEST034072
Overlaps with miRBase pre-miRNAs: cfa-mir-365-1 ppy-mir-365-1 ssc-mir-365-1 ptr-mir-365-1 hsa-mir-365a mml-mir-365-1 eca-mir-365-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636846 TAATGCCCCTAAAAATCCTTAT GAGGGACTTTCAGGGGCAGCTGTG down 3 2


Secondary structure

GTTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGACTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAGTGTTCATC
----------------------GAGGGACTTTCAGGGGCAGCTGTGT 	1
--------------------------------------------------------------TAATGCCCCTAAAAATCCTT 	1
--------------------------------------------------------------TAATGCCCCTAAAAATCCTTAT 	14
--------------------------------------------------------------TAATGCCCCTAAAAATCCTTA 	3

Overlaps with: MNEST027146
Overlaps with miRBase pre-miRNAs: eca-mir-365-1 ssc-mir-365-2
HuntMi prediction: true miRNA