miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TACAGTACTGTGATAACTGAA

selected species: Homo sapiens



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM565979-9647 GTACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCTG down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
--------------------------------------------------------GGTACAGTACTGTGATAACT 	1
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	253
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	144
---------------------------------------------------------GTACAGTACTGTGATAACTG 	5
---------------------------------------------------------GTACAGTACTGTGATAACT 	4
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	62
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	119
----------------------------------------------------------TACAGTACTGTGATAACTGA 	46
----------------------------------------------------------TACAGTACTGTGATAACTG 	3
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	2


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM531974 TACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCT down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
---------------------TCAGTTATCACAGTGCTGATGCT 	2
----------------------CAGTTATCACAGTGCTGATGC 	1
---------------------------------------------------------GTACAGTACTGTGATAACTGAAG 	23
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	27472
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	17438
---------------------------------------------------------GTACAGTACTGTGATAACTG 	2662
---------------------------------------------------------GTACAGTACTGTGATAACT 	4348
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	3781
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	72402
----------------------------------------------------------TACAGTACTGTGATAACTGA 	33114
----------------------------------------------------------TACAGTACTGTGATAACTG 	3152
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGA 	6
----------------------------------------------------------TACAGTACTGTGATAACTGAAGG 	4
-----------------------------------------------------------ACAGTACTGTGATAACTGAAG 	36
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	530
-----------------------------------------------------------ACAGTACTGTGATAACTGA 	210
------------------------------------------------------------CAGTACTGTGATAACTGAA 	91
------------------------------------------------------------CAGTACTGTGATAACTGAAG 	4
-------------------------------------------------------------AGTACTGTGATAACTGAAG 	3


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM494811_K562 GTACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCTG down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
--------------------------------------------------------GGTACAGTACTGTGATAACTGAA 	1
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	4698
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	1866
---------------------------------------------------------GTACAGTACTGTGATAACTG 	35
---------------------------------------------------------GTACAGTACTGTGATAACT 	12
---------------------------------------------------------GTACAGTACTGTGATAACTGAAG 	5
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	2102
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	2118
----------------------------------------------------------TACAGTACTGTGATAACTGA 	582
----------------------------------------------------------TACAGTACTGTGATAACTG 	17
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGA 	1
----------------------------------------------------------TACAGTACTGTGATAACTGAAGG 	1
-----------------------------------------------------------ACAGTACTGTGATAACTGAAG 	9
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	2
------------------------------------------------------------CAGTACTGTGATAACTGAA 	2
------------------------------------------------------------CAGTACTGTGATAACTGAAG 	1


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531978 TACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCT down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
TGACTGACAGGCTGCCCTGG 	1
-----------------------------------------------------AAAGGTACAGTACTGTGATAACTGAA 	1
--------------------------------------------------------GGTACAGTACTGTGATAACTGA 	3
--------------------------------------------------------GGTACAGTACTGTGATAACTGAA 	2
--------------------------------------------------------GGTACAGTACTGTGATAACTG 	1
--------------------------------------------------------GGTACAGTACTGTGATAACT 	1
---------------------------------------------------------GTACAGTACTGTGATAACTGAAG 	75
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	74446
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	41590
---------------------------------------------------------GTACAGTACTGTGATAACTG 	5560
---------------------------------------------------------GTACAGTACTGTGATAACT 	8493
---------------------------------------------------------GTACAGTACTGTGATAACTGAAGGA 	5
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGA 	12
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	9841
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	141593
----------------------------------------------------------TACAGTACTGTGATAACTGA 	54400
----------------------------------------------------------TACAGTACTGTGATAACTG 	4809
----------------------------------------------------------TACAGTACTGTGATAACTGAAGG 	5
-----------------------------------------------------------ACAGTACTGTGATAACTGAAG 	113
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	952
-----------------------------------------------------------ACAGTACTGTGATAACTGA 	292
------------------------------------------------------------CAGTACTGTGATAACTGAAG 	21
------------------------------------------------------------CAGTACTGTGATAACTGAA 	196
-------------------------------------------------------------AGTACTGTGATAACTGAAG 	7


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM569189 TACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCT down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
---------------------TCAGTTATCACAGTGCTGATG 	1
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	5215
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	3179
---------------------------------------------------------GTACAGTACTGTGATAACTGAAGG 	2
---------------------------------------------------------GTACAGTACTGTGATAACTG 	65
---------------------------------------------------------GTACAGTACTGTGATAACT 	159
---------------------------------------------------------GTACAGTACTGTGATAACTGAAG 	29
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGA 	1
----------------------------------------------------------TACAGTACTGTGATAACTGAAGG 	23
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	1313
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	11919
----------------------------------------------------------TACAGTACTGTGATAACTGA 	3603
----------------------------------------------------------TACAGTACTGTGATAACTG 	85
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	24
-----------------------------------------------------------ACAGTACTGTGATAACTGAAG 	7
-----------------------------------------------------------ACAGTACTGTGATAACTGA 	3
------------------------------------------------------------CAGTACTGTGATAACTGAAG 	1
------------------------------------------------------------CAGTACTGTGATAACTGAA 	6


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM494812_HL60 GTACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCTG down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
----------------------CAGTTATCACAGTGCTGATGCT 	2
---------------------------------------------------------GTACAGTACTGTGATAACTGAAG 	15
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	15261
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	7887
---------------------------------------------------------GTACAGTACTGTGATAACTG 	118
---------------------------------------------------------GTACAGTACTGTGATAACT 	31
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	1774
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	2896
----------------------------------------------------------TACAGTACTGTGATAACTGA 	1220
----------------------------------------------------------TACAGTACTGTGATAACTG 	27
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGA 	1
-----------------------------------------------------------ACAGTACTGTGATAACTGAAG 	10
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	14
-----------------------------------------------------------ACAGTACTGTGATAACTGA 	5
------------------------------------------------------------CAGTACTGTGATAACTGAA 	3
------------------------------------------------------------CAGTACTGTGATAACTGAAG 	1
-------------------------------------------------------------AGTACTGTGATAACTGAAG 	1


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM531986-13294 TACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCT down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
----------------------CAGTTATCACAGTGCTGATGCTGTC 	1
----------------------------------------------------TAAAGGTACAGTACTGTGATAACTGA 	1
-----------------------------------------------------AAAGGTACAGTACTGTGATAACTGAA 	11
-----------------------------------------------------AAAGGTACAGTACTGTGATAACT 	9
-----------------------------------------------------AAAGGTACAGTACTGTGATAACTGA 	8
------------------------------------------------------AAGGTACAGTACTGTGATAACTGAA 	4
-------------------------------------------------------AGGTACAGTACTGTGATAACTGAA 	4
--------------------------------------------------------GGTACAGTACTGTGATAACTGAA 	5
--------------------------------------------------------GGTACAGTACTGTGATAACTGA 	1
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	15206
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	11928
---------------------------------------------------------GTACAGTACTGTGATAACTG 	1158
---------------------------------------------------------GTACAGTACTGTGATAACT 	16953
---------------------------------------------------------GTACAGTACTGTGATAACTGAAG 	9
---------------------------------------------------------GTACAGTACTGTGATAACTGAAGG 	1
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	2603
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	54040
----------------------------------------------------------TACAGTACTGTGATAACTGA 	32849
----------------------------------------------------------TACAGTACTGTGATAACTG 	2577
----------------------------------------------------------TACAGTACTGTGATAACTGAAGG 	6
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGA 	3
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	413
-----------------------------------------------------------ACAGTACTGTGATAACTGA 	170
-----------------------------------------------------------ACAGTACTGTGATAACTGAAG 	25
------------------------------------------------------------CAGTACTGTGATAACTGAA 	67
------------------------------------------------------------CAGTACTGTGATAACTGAAG 	2
-------------------------------------------------------------AGTACTGTGATAACTGAAG 	1


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM531975 TACAGTACTGTGATAACTGAA CAGTTATCACAGTGCTGATGCT down 1 1


Secondary structure

TGACTGACAGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCTATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTACC
----------------------CAGTTATCACAGTGCTGAT 	1
------------------------------------------------------AAGGTACAGTACTGTGATAACTGA 	2
--------------------------------------------------------GGTACAGTACTGTGATAACT 	3
---------------------------------------------------------GTACAGTACTGTGATAACTGAAG 	90
---------------------------------------------------------GTACAGTACTGTGATAACTGAA 	76982
---------------------------------------------------------GTACAGTACTGTGATAACTGA 	52506
---------------------------------------------------------GTACAGTACTGTGATAACTG 	4739
---------------------------------------------------------GTACAGTACTGTGATAACT 	68132
---------------------------------------------------------GTACAGTACTGTGATAACTGAAGG 	3
---------------------------------------------------------GTACAGTACTGTGATAACTGAAGGA 	1
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGA 	24
----------------------------------------------------------TACAGTACTGTGATAACTGAAGG 	21
----------------------------------------------------------TACAGTACTGTGATAACTGAAG 	15147
----------------------------------------------------------TACAGTACTGTGATAACTGAA 	198707
----------------------------------------------------------TACAGTACTGTGATAACTGA 	102330
----------------------------------------------------------TACAGTACTGTGATAACTG 	7036
----------------------------------------------------------TACAGTACTGTGATAACTGAAGGAT 	1
-----------------------------------------------------------ACAGTACTGTGATAACTGAAG 	172
-----------------------------------------------------------ACAGTACTGTGATAACTGAA 	1492
-----------------------------------------------------------ACAGTACTGTGATAACTGA 	568
------------------------------------------------------------CAGTACTGTGATAACTGAAG 	21
------------------------------------------------------------CAGTACTGTGATAACTGAA 	236
-------------------------------------------------------------AGTACTGTGATAACTGAAG 	3


Overlaps with: MNEST027502 MNEST028415 MNEST030804
Overlaps with miRBase pre-miRNAs: age-mir-101 hsa-mir-101-1 ppy-mir-101-3
HuntMi prediction: true miRNA