miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TACCAACCTTTCATCGTTCCC

selected species: Arabidopsis thaliana

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM415785	TACCAACCTTTCATCGTTCCC	GAACGCATGAGAGGTTGGTAAA	up	0	1

Secondary structure

AGCTAAACTGGAAGAAGTTAAAACACAACGTCCGTTACAACTATCATTCTCACTCACTCATGTGAGCAGAAAGAGTAGCATGATATTTTCTTCAAGGTCTTTACCAACCTTTCATCGTTCCCTTCTTTGCAATAACGCTGTTTTGCAAAACCGTGATAGTGCTGAGCCGATGAGCCTCTAATGAAATTATAGACTCATCGGCTCAGGACCATTGCGGTTGTGCAAAACGGTGTTATTGCTGAGAAGGGAACGCATGAGAGGTTGGTAAAGACCTCAATGGAATCTTATGGTACTCTTTTTGCTCACATGAGTGAGTGATAACCATAGCTGAAACCAATGATGTGTTTTTCTTTTTACTCTATAACTA
---------------------------------------------------------------------------------------------------TTTACCAACCTTTCATCGTTCC 	1
----------------------------------------------------------------------------------------------------TTACCAACCTTTCATCGTTCCC 	1
----------------------------------------------------------------------------------------------------TTACCAACCTTTCATCGTTCC 	2
-----------------------------------------------------------------------------------------------------TACCAACCTTTCATCGTTCCC 	12
------------------------------------------------------------------------------------------------------ACCAACCTTTCATCGTTCCCT 	1
------------------------------------------------------------------------------------------------------ACCAACCTTTCATCGTTCCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TGCAAAACCGTGATAGTGCTGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TGCAAAACCGTGATAGTGC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTTGTGCAAAACGGTGTTA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGAGAAGGGAACGCATGAG 	2

Overlaps with: MNEST040162 MNEST047068
Overlaps with miRBase pre-miRNAs: ath-MIR839
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM366869	TACCAACCTTTCATCGTTCCC	GAACGCATGAGAGGTTGGTAAA	up	0	1

Secondary structure

AGCTAAACTGGAAGAAGTTAAAACACAACGTCCGTTACAACTATCATTCTCACTCACTCATGTGAGCAGAAAGAGTAGCATGATATTTTCTTCAAGGTCTTTACCAACCTTTCATCGTTCCCTTCTTTGCAATAACGCTGTTTTGCAAAACCGTGATAGTGCTGAGCCGATGAGCCTCTAATGAAATTATAGACTCATCGGCTCAGGACCATTGCGGTTGTGCAAAACGGTGTTATTGCTGAGAAGGGAACGCATGAGAGGTTGGTAAAGACCTCAATGGAATCTTATGGTACTCTTTTTGCTCACATGAGTGAGTGATAACCATAGCTGAAACCAATGATGTGTTTTTCTTTTTACTCTATAACTA
----------------------------------------------------------------------------------------------------TTACCAACCTTTCATCGTTCC 	1
-----------------------------------------------------------------------------------------------------TACCAACCTTTCATCGTTCCC 	9
--------------------------------------------------------------------------------------------------------------------------TTCTTTGCAATAACGCTGTTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TGCAAAACCGTGATAGTGCTGA 	5
------------------------------------------------------------------------------------------------------------------------------------------------GCAAAACCGTGATAGTGCTGA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACCATTGCGGTTGTGCAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACCATTGCGGTTGTGCAAA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTGTTATTGCTGAGAAGG 	1

Overlaps with: MNEST040162 MNEST047068
Overlaps with miRBase pre-miRNAs: ath-MIR839
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM366866	TACCAACCTTTCATCGTTCCC	GAACGCATGAGAGGTTGGTAAA	up	0	1

Secondary structure

AGCTAAACTGGAAGAAGTTAAAACACAACGTCCGTTACAACTATCATTCTCACTCACTCATGTGAGCAGAAAGAGTAGCATGATATTTTCTTCAAGGTCTTTACCAACCTTTCATCGTTCCCTTCTTTGCAATAACGCTGTTTTGCAAAACCGTGATAGTGCTGAGCCGATGAGCCTCTAATGAAATTATAGACTCATCGGCTCAGGACCATTGCGGTTGTGCAAAACGGTGTTATTGCTGAGAAGGGAACGCATGAGAGGTTGGTAAAGACCTCAATGGAATCTTATGGTACTCTTTTTGCTCACATGAGTGAGTGATAACCATAGCTGAAACCAATGATGTGTTTTTCTTTTTACTCTATAACTA
-----------------------------------------------------------------------------------------------------TACCAACCTTTCATCGTTCCC 	7
----------------------------------------------------------------------------------------------------------------------------------------------TTGCAAAACCGTGATAGTGCTGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TGCAAAACCGTGATAGTGCTGA 	1

Overlaps with: MNEST040162 MNEST047068
Overlaps with miRBase pre-miRNAs: ath-MIR839
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM518432-13544	TACCAACCTTTCATCGTTCCC	GAACGCATGAGAGGTTGGTAAA	up	0	1

Secondary structure

AGCTAAACTGGAAGAAGTTAAAACACAACGTCCGTTACAACTATCATTCTCACTCACTCATGTGAGCAGAAAGAGTAGCATGATATTTTCTTCAAGGTCTTTACCAACCTTTCATCGTTCCCTTCTTTGCAATAACGCTGTTTTGCAAAACCGTGATAGTGCTGAGCCGATGAGCCTCTAATGAAATTATAGACTCATCGGCTCAGGACCATTGCGGTTGTGCAAAACGGTGTTATTGCTGAGAAGGGAACGCATGAGAGGTTGGTAAAGACCTCAATGGAATCTTATGGTACTCTTTTTGCTCACATGAGTGAGTGATAACCATAGCTGAAACCAATGATGTGTTTTTCTTTTTACTCTATAACTA
--------------------------------------------------------------------------------------------------CTTTACCAACCTTTCATCGTTC 	1
---------------------------------------------------------------------------------------------------TTTACCAACCTTTCATCGTTCCC 	1
----------------------------------------------------------------------------------------------------TTACCAACCTTTCATCGTTCCC 	1
-----------------------------------------------------------------------------------------------------TACCAACCTTTCATCGTTCC 	1
-----------------------------------------------------------------------------------------------------TACCAACCTTTCATCGTTCCC 	37
------------------------------------------------------------------------------------------------------ACCAACCTTTCATCGTTCCCT 	1
--------------------------------------------------------------------------------------------------------------------------TTCTTTGCAATAACGCTGTTT 	8
---------------------------------------------------------------------------------------------------------------------------------------------TTTGCAAAACCGTGATAGTGCTG 	1
---------------------------------------------------------------------------------------------------------------------------------------------TTTGCAAAACCGTGATAGTGCTGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------TTGCAAAACCGTGATAGTGCTGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------TTGCAAAACCGTGATAGTGCTGAG 	2
-----------------------------------------------------------------------------------------------------------------------------------------------TGCAAAACCGTGATAGTGCTGAGC 	5
-----------------------------------------------------------------------------------------------------------------------------------------------TGCAAAACCGTGATAGTGCTGA 	25
------------------------------------------------------------------------------------------------------------------------------------------------GCAAAACCGTGATAGTGCTGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------CAAAACCGTGATAGTGCTGAG 	5
--------------------------------------------------------------------------------------------------------------------------------------------------AAAACCGTGATAGTGCTGAGCCGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------ACCGTGATAGTGCTGAGCCGATGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------CGTGATAGTGCTGAGCCGATGAGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGCTGAGCCGATGAGCCTCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCATCGGCTCAGGACCATTGC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTCAGGACCATTGCGGTTGTG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGACCATTGCGGTTGTGCAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACCATTGCGGTTGTGCAAA 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACCATTGCGGTTGTGCAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGTGTTATTGCTGAGAAGGGA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTGTTATTGCTGAGAAGGG 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTGTTATTGCTGAGAAGG 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTTATTGCTGAGAAGGGA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACGCATGAGAGGTTGGTAAA 	3

Overlaps with: MNEST040162 MNEST047068
Overlaps with miRBase pre-miRNAs: ath-MIR839
HuntMi prediction: true miRNA