miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TACCCGTAATGTTTCCGCTGAG

selected species: Caenorhabditis elegans

9 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Caenorhabditis elegans	GSM427344-5691	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
----------------------TGGCGGATCCATTTTGGGTTGTACC 	1
----------------------------------------------------------------GTACCCGTAATGTTTCCGCTGAG 	1
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	794
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGA 	4
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGA 	6
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAA 	2
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTG 	1
-------------------------------------------------------------------CCCGTAATGTTTCCGCTGAG 	2

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Caenorhabditis elegans	GSM427332-5684	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
----------------------TGGCGGATCCATTTTGGGTTGTACC 	1
----------------------------------------------------------------GTACCCGTAATGTTTCCGCTGAG 	13
----------------------------------------------------------------GTACCCGTAATGTTTCCGCTGA 	5
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAA 	26
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGA 	33
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	3027
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGA 	62
-----------------------------------------------------------------TACCCGTAATGTTTCCGCT 	19
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTG 	9
------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAG 	14
------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAGA 	1
-------------------------------------------------------------------CCCGTAATGTTTCCGCTGAG 	9
--------------------------------------------------------------------CCGTAATGTTTCCGCTGAG 	3

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Caenorhabditis elegans	GSM378784	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	350
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTG 	22
------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAGA 	2
------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAG 	2
------------------------------------------------------------------ACCCGTAATGTTTCCGCTGA 	2

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Caenorhabditis elegans	GSM427346-5695	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
----------------------TGGCGGATCCATTTTGGGTTGTACCT 	1
----------------------TGGCGGATCCATTTTGGGTTGTACC 	2
----------------------------------------------------------------GTACCCGTAATGTTTCCGCTGA 	2
----------------------------------------------------------------GTACCCGTAATGTTTCCGCTGAG 	1
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAA 	10
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGA 	39
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	3175
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGA 	93
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTG 	8
-----------------------------------------------------------------TACCCGTAATGTTTCCGCT 	8

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Caenorhabditis elegans	GSM427345-5693	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	442
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGA 	14
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGA 	6
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTG 	4
-----------------------------------------------------------------TACCCGTAATGTTTCCGCT 	7
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAA 	2
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAAC 	1
-------------------------------------------------------------------CCCGTAATGTTTCCGCTGAG 	1

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Caenorhabditis elegans	GSM427297-5679	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
----------------------------------------------------------------GTACCCGTAATGTTTCCGCTGAG 	1
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	18

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Caenorhabditis elegans	GSM297751-9445	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
----------------------TGGCGGATCCATTTTGGGTTGTA 	2
----------------------TGGCGGATCCATTTTGGGTTGTACC 	75
----------------------TGGCGGATCCATTTTGGGTTGTAC 	10
----------------------TGGCGGATCCATTTTGGGTT 	1
-----------------------GGCGGATCCATTTTGGGTTGTACC 	1
---------------------------GATCCATTTTGGGTTGTAC 	4
----------------------------------------------------------------GTACCCGTAATGTTTCCGCTGA 	1
-----------------------------------------------------------------TACCCGTAATGTTTCCGCT 	7
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGA 	32
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTG 	7
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	5578
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGA 	203
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAA 	1
------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAG 	6
--------------------------------------------------------------------CCGTAATGTTTCCGCTGAG 	17
----------------------------------------------------------------------GTAATGTTTCCGCTGAGAA 	1

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Caenorhabditis elegans	GSM297752-9446	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
----------------------TGGCGGATCCATTTTGGGTTGTA 	1
----------------------TGGCGGATCCATTTTGGGTTGT 	1
----------------------TGGCGGATCCATTTTGGGTTGTACC 	60
----------------------TGGCGGATCCATTTTGGGTTGTACCT 	2
----------------------TGGCGGATCCATTTTGGGTTGTAC 	8
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGA 	50
-----------------------------------------------------------------TACCCGTAATGTTTCCGCT 	18
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTG 	14
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	8847
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAGAA 	1
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGA 	243
------------------------------------------------------------------ACCCGTAATGTTTCCGCTGAG 	2
-------------------------------------------------------------------CCCGTAATGTTTCCGCTGAG 	1
--------------------------------------------------------------------CCGTAATGTTTCCGCTGAG 	52
---------------------------------------------------------------------CGTAATGTTTCCGCTGAGA 	1

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Caenorhabditis elegans	GSM427301-5681	TACCCGTAATGTTTCCGCTGAG	TGGCGGATCCATTTTGGGTTGTACC	down	3	3

Secondary structure

GAACGGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACCACTT
-----------------------------------------------------------------TACCCGTAATGTTTCCGCTGAG 	7

Overlaps with: MNEST038294
Overlaps with miRBase pre-miRNAs: cel-mir-56
HuntMi prediction: true miRNA