miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TACCCTGTAGAACCGAATTTGT

selected species: Gallus gallus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GAAAACAGAACGTTATTACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGATATTCATATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAACTTCACCTTTC
-------------------------------TACCCTGTAGAACCGAATTTGT 	106
-------------------------------TACCCTGTAGAACCGAATTTGTGTGA 	2
-------------------------------TACCCTGTAGAACCGAATTTGTGT 	18
-------------------------------TACCCTGTAGAACCGAATTTGTG 	20
-------------------------------TACCCTGTAGAACCGAATTTGTGTG 	3
--------------------------------ACCCTGTAGAACCGAATTTGTGTGA 	2
--------------------------------ACCCTGTAGAACCGAATTTGTG 	3
--------------------------------ACCCTGTAGAACCGAATTTGT 	3
--------------------------------ACCCTGTAGAACCGAATTTGTGT 	16
----------------------------------------------------------------------ACAGATTCGATTCTAGGGGAAT 	2
------------------------------------------------------------------------AGATTCGATTCTAGGGGAATA 	1
------------------------------------------------------------------------AGATTCGATTCTAGGGGAATAT 	2


Overlaps with: MNEST025890
Overlaps with miRBase pre-miRNAs: gga-mir-10b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM388803 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GAAAACAGAACGTTATTACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGATATTCATATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAACTTCACCTTTC
------------------------------ATACCCTGTAGAACCGAATTTGT 	114
-------------------------------TACCCTGTAGAACCGAATTTGTGT 	2609
-------------------------------TACCCTGTAGAACCGAATTTGTG 	9218
-------------------------------TACCCTGTAGAACCGAATTTGT 	113106
-------------------------------TACCCTGTAGAACCGAATTTG 	6426
-------------------------------TACCCTGTAGAACCGAATTT 	986
-------------------------------TACCCTGTAGAACCGAATT 	301
--------------------------------ACCCTGTAGAACCGAATTTGTGTG 	91
--------------------------------ACCCTGTAGAACCGAATTTGTGT 	3328
--------------------------------ACCCTGTAGAACCGAATTTGTG 	1127
--------------------------------ACCCTGTAGAACCGAATTTGT 	1549
--------------------------------ACCCTGTAGAACCGAATTTG 	126
--------------------------------ACCCTGTAGAACCGAATTT 	25
---------------------------------CCCTGTAGAACCGAATTTGTGT 	19
---------------------------------CCCTGTAGAACCGAATTTGTG 	12
---------------------------------CCCTGTAGAACCGAATTTGT 	22


Overlaps with: MNEST025890
Overlaps with miRBase pre-miRNAs: gga-mir-10b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GAAAACAGAACGTTATTACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGATATTCATATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAACTTCACCTTTC
-------------------------------TACCCTGTAGAACCGAATTTGTGT 	4
-------------------------------TACCCTGTAGAACCGAATTTGT 	40
-------------------------------TACCCTGTAGAACCGAATTTGTG 	5
--------------------------------ACCCTGTAGAACCGAATTTGTGTG 	1
--------------------------------ACCCTGTAGAACCGAATTTGTGT 	1
-----------------------------------------------------------------------CAGATTCGATTCTAGGGGAAT 	1
------------------------------------------------------------------------AGATTCGATTCTAGGGGAAT 	1
------------------------------------------------------------------------AGATTCGATTCTAGGGGAATA 	6


Overlaps with: MNEST025890
Overlaps with miRBase pre-miRNAs: gga-mir-10b
HuntMi prediction: true miRNA