miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TACCCTGTAGAACCGAATTTGT

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GGTAGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAAC
---------------------TACCCTGTAGAACCGAATTTGT 	1330
---------------------TACCCTGTAGAACCGAATTTGTG 	126
---------------------TACCCTGTAGAACCGAATTTGTGT 	5
---------------------TACCCTGTAGAACCGAATTT 	13
---------------------TACCCTGTAGAACCGAATTTG 	66
---------------------TACCCTGTAGAACCGAATT 	9
----------------------ACCCTGTAGAACCGAATTTGTGT 	11
----------------------ACCCTGTAGAACCGAATTTGTG 	44
----------------------ACCCTGTAGAACCGAATTT 	1
----------------------ACCCTGTAGAACCGAATTTGT 	78
----------------------ACCCTGTAGAACCGAATTTG 	5
-------------------------CTGTAGAACCGAATTTGTGT 	1


Overlaps with: MNEST033910
Overlaps with miRBase pre-miRNAs: eca-mir-10b ssc-mir-10b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GGTAGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAAC
---------------------TACCCTGTAGAACCGAATTTGT 	596
---------------------TACCCTGTAGAACCGAATTTGTG 	42
---------------------TACCCTGTAGAACCGAATTTGTGT 	6
---------------------TACCCTGTAGAACCGAATTT 	3
---------------------TACCCTGTAGAACCGAATTTG 	30
---------------------TACCCTGTAGAACCGAATT 	3
----------------------ACCCTGTAGAACCGAATTTGTGT 	5
----------------------ACCCTGTAGAACCGAATTTGTG 	19
----------------------ACCCTGTAGAACCGAATTTGT 	29
----------------------ACCCTGTAGAACCGAATTTG 	2


Overlaps with: MNEST033910
Overlaps with miRBase pre-miRNAs: eca-mir-10b ssc-mir-10b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GGTAGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAAC
--------------------ATACCCTGTAGAACCGAATTTGT 	2
---------------------TACCCTGTAGAACCGAATTTGTG 	4235
---------------------TACCCTGTAGAACCGAATTTGT 	50157
---------------------TACCCTGTAGAACCGAATTTGTGTG 	1
---------------------TACCCTGTAGAACCGAATTTGTGT 	280
---------------------TACCCTGTAGAACCGAATTTG 	2005
---------------------TACCCTGTAGAACCGAATTT 	443
---------------------TACCCTGTAGAACCGAATT 	394
----------------------ACCCTGTAGAACCGAATTTGTGTG 	10
----------------------ACCCTGTAGAACCGAATTTGTG 	2119
----------------------ACCCTGTAGAACCGAATTT 	72
----------------------ACCCTGTAGAACCGAATTTGTGT 	1512
----------------------ACCCTGTAGAACCGAATTTGT 	1888
----------------------ACCCTGTAGAACCGAATTTG 	171
-----------------------CCCTGTAGAACCGAATTTGTGT 	1
------------------------CCTGTAGAACCGAATTTGTGT 	1
------------------------CCTGTAGAACCGAATTTGT 	2
-------------------------CTGTAGAACCGAATTTGTGT 	2
-------------------------CTGTAGAACCGAATTTGTG 	1
------------------------------------------------------------ACAGATTCGATTCTAGGGGA 	3
------------------------------------------------------------ACAGATTCGATTCTAGGGGAAT 	2
-------------------------------------------------------------CAGATTCGATTCTAGGGGAAT 	2
-------------------------------------------------------------CAGATTCGATTCTAGGGGAA 	1
--------------------------------------------------------------AGATTCGATTCTAGGGGAATAT 	1
--------------------------------------------------------------AGATTCGATTCTAGGGGAATA 	2
--------------------------------------------------------------AGATTCGATTCTAGGGGAA 	1


Overlaps with: MNEST033910
Overlaps with miRBase pre-miRNAs: eca-mir-10b ssc-mir-10b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GGTAGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAAC
--------------------ATACCCTGTAGAACCGAATTTGT 	3
---------------------TACCCTGTAGAACCGAATTTGT 	45095
---------------------TACCCTGTAGAACCGAATTTG 	2903
---------------------TACCCTGTAGAACCGAATTT 	402
---------------------TACCCTGTAGAACCGAATTTGTGT 	588
---------------------TACCCTGTAGAACCGAATTTGTG 	9441
---------------------TACCCTGTAGAACCGAATTTGTGTG 	5
---------------------TACCCTGTAGAACCGAATT 	213
----------------------ACCCTGTAGAACCGAATTTGTGTGG 	5
----------------------ACCCTGTAGAACCGAATTTGTG 	3844
----------------------ACCCTGTAGAACCGAATTTG 	162
----------------------ACCCTGTAGAACCGAATTTGTGTG 	14
----------------------ACCCTGTAGAACCGAATTTGT 	2134
----------------------ACCCTGTAGAACCGAATTTGTGT 	1300
----------------------ACCCTGTAGAACCGAATTT 	34
------------------------CCTGTAGAACCGAATTTGTGT 	5
------------------------CCTGTAGAACCGAATTTGT 	4
------------------------CCTGTAGAACCGAATTTGTG 	3
-------------------------CTGTAGAACCGAATTTGTGT 	1
------------------------------------------------------------ACAGATTCGATTCTAGGGGAAT 	17
------------------------------------------------------------ACAGATTCGATTCTAGGGGA 	9
-------------------------------------------------------------CAGATTCGATTCTAGGGGAAT 	6
-------------------------------------------------------------CAGATTCGATTCTAGGGGAA 	1
-------------------------------------------------------------CAGATTCGATTCTAGGGGA 	8
-------------------------------------------------------------CAGATTCGATTCTAGGGGAATA 	1
--------------------------------------------------------------AGATTCGATTCTAGGGGAA 	3
--------------------------------------------------------------AGATTCGATTCTAGGGGAATAT 	1
--------------------------------------------------------------AGATTCGATTCTAGGGGAAT 	2
--------------------------------------------------------------AGATTCGATTCTAGGGGAATA 	4


Overlaps with: MNEST033910
Overlaps with miRBase pre-miRNAs: eca-mir-10b ssc-mir-10b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TACCCTGTAGAACCGAATTTGT AGATTCGATTCTAGGGGAATA up 2 1


Secondary structure

GGTAGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAAC
---------------------TACCCTGTAGAACCGAATTTGTGTGG 	1
---------------------TACCCTGTAGAACCGAATTTGTG 	3388
---------------------TACCCTGTAGAACCGAATTTGT 	45462
---------------------TACCCTGTAGAACCGAATTT 	317
---------------------TACCCTGTAGAACCGAATTTGTGT 	204
---------------------TACCCTGTAGAACCGAATTTG 	1534
---------------------TACCCTGTAGAACCGAATT 	342
----------------------ACCCTGTAGAACCGAATTTGTGTGG 	1
----------------------ACCCTGTAGAACCGAATTTGTGTG 	7
----------------------ACCCTGTAGAACCGAATTTGTGT 	1154
----------------------ACCCTGTAGAACCGAATTTGTG 	1607
----------------------ACCCTGTAGAACCGAATTT 	45
----------------------ACCCTGTAGAACCGAATTTGT 	1557
----------------------ACCCTGTAGAACCGAATTTG 	106
-----------------------CCCTGTAGAACCGAATTTGTG 	1
------------------------CCTGTAGAACCGAATTTGTGT 	1
------------------------CCTGTAGAACCGAATTTGTG 	2
------------------------CCTGTAGAACCGAATTTGT 	6
-------------------------CTGTAGAACCGAATTTGTG 	2
------------------------------------------------------------ACAGATTCGATTCTAGGGGAA 	2
------------------------------------------------------------ACAGATTCGATTCTAGGGGA 	1
------------------------------------------------------------ACAGATTCGATTCTAGGGGAAT 	1
--------------------------------------------------------------AGATTCGATTCTAGGGGAATA 	1
--------------------------------------------------------------AGATTCGATTCTAGGGGAAT 	1


Overlaps with: MNEST033910
Overlaps with miRBase pre-miRNAs: eca-mir-10b ssc-mir-10b
HuntMi prediction: true miRNA