miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TACCCTGTAGATCCGAATTTGT

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 TACCCTGTAGATCCGAATTTGT AAATTCGTGTCTTGGGGAATA up 2 1


Secondary structure

ATGATGTCTGTCATCTATATATACCCTGTAGATCCGAATTTGTGTGAATATACAGTCGCAAATTCGTGTCTTGGGGAATATGTAGTTGACATAAACAC
---------------------TACCCTGTAGATCCGAATTTGTGTGA 	10
---------------------TACCCTGTAGATCCGAATTTGTGTG 	39
---------------------TACCCTGTAGATCCGAATTTGTGT 	226
---------------------TACCCTGTAGATCCGAATTTGTG 	1650
---------------------TACCCTGTAGATCCGAATTTGT 	2327
---------------------TACCCTGTAGATCCGAATTTG 	38
---------------------TACCCTGTAGATCCGAATTT 	19
---------------------TACCCTGTAGATCCGAATT 	10
----------------------ACCCTGTAGATCCGAATTTGTGTGAA 	1
----------------------ACCCTGTAGATCCGAATTTGTGTGA 	3
----------------------ACCCTGTAGATCCGAATTTGTGTG 	20
----------------------ACCCTGTAGATCCGAATTTGTGT 	103
----------------------ACCCTGTAGATCCGAATTTGTG 	1112
----------------------ACCCTGTAGATCCGAATTTGT 	186
----------------------ACCCTGTAGATCCGAATTTG 	1
------------------------CCTGTAGATCCGAATTTGTGTG 	1
------------------------CCTGTAGATCCGAATTTGTG 	2
-------------------------CTGTAGATCCGAATTTGTG 	2
--------------------------TGTAGATCCGAATTTGTGTGAATAT 	1
--------------------------TGTAGATCCGAATTTGTGTGAAT 	2
--------------------------TGTAGATCCGAATTTGTGTGAA 	1
--------------------------TGTAGATCCGAATTTGTGTGA 	6
--------------------------TGTAGATCCGAATTTGTGTG 	1
--------------------------TGTAGATCCGAATTTGTGT 	1
---------------------------GTAGATCCGAATTTGTGTGAAT 	4
---------------------------GTAGATCCGAATTTGTGTGAA 	3
---------------------------GTAGATCCGAATTTGTGTGA 	4
----------------------------TAGATCCGAATTTGTGTGAAT 	1
----------------------------TAGATCCGAATTTGTGTGA 	1
----------------------------------------TGTGTGAATATACAGTCGCAA 	1
------------------------------------------------TATACAGTCGCAAATTCGTGTCTTG 	9
------------------------------------------------TATACAGTCGCAAATTCGTGTCTT 	8
------------------------------------------------TATACAGTCGCAAATTCGTGTCT 	8
------------------------------------------------TATACAGTCGCAAATTCGTGTC 	10
------------------------------------------------TATACAGTCGCAAATTCGTGT 	4
-------------------------------------------------ATACAGTCGCAAATTCGTGTCT 	2
--------------------------------------------------TACAGTCGCAAATTCGTGTCTTGG 	1
--------------------------------------------------TACAGTCGCAAATTCGTGTCTTG 	1
--------------------------------------------------TACAGTCGCAAATTCGTGTCTT 	4
---------------------------------------------------ACAGTCGCAAATTCGTGTCTTGGGGA 	2
---------------------------------------------------ACAGTCGCAAATTCGTGTCTTGG 	2
----------------------------------------------------CAGTCGCAAATTCGTGTCTTG 	3
------------------------------------------------------GTCGCAAATTCGTGTCTTGGGGAA 	1
---------------------------------------------------------GCAAATTCGTGTCTTGGGGAAT 	2
----------------------------------------------------------CAAATTCGTGTCTTGGGGAATAT 	1
----------------------------------------------------------CAAATTCGTGTCTTGGGGAATA 	2
----------------------------------------------------------CAAATTCGTGTCTTGGGGAAT 	56
----------------------------------------------------------CAAATTCGTGTCTTGGGGAA 	8
----------------------------------------------------------CAAATTCGTGTCTTGGGGA 	1
-----------------------------------------------------------AAATTCGTGTCTTGGGGAATAT 	2
-----------------------------------------------------------AAATTCGTGTCTTGGGGAATA 	11
-----------------------------------------------------------AAATTCGTGTCTTGGGGAAT 	19
-----------------------------------------------------------AAATTCGTGTCTTGGGGAA 	3
-------------------------------------------------------------ATTCGTGTCTTGGGGAATATGT 	1
-------------------------------------------------------------ATTCGTGTCTTGGGGAATAT 	1
--------------------------------------------------------------TTCGTGTCTTGGGGAATAT 	4



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TACCCTGTAGATCCGAATTTGT AAATTCGTGTCTTGGGGAATA up 2 1


Secondary structure

ATGATGTCTGTCATCTATATATACCCTGTAGATCCGAATTTGTGTGAATATACAGTCGCAAATTCGTGTCTTGGGGAATATGTAGTTGACATAAACAC
------------------ATATACCCTGTAGATCCGAATTT 	1
---------------------TACCCTGTAGATCCGAATTTGTGT 	38
---------------------TACCCTGTAGATCCGAATTTGTG 	740
---------------------TACCCTGTAGATCCGAATTTGT 	2366
---------------------TACCCTGTAGATCCGAATTTG 	14
----------------------ACCCTGTAGATCCGAATTTGTG 	1230
----------------------ACCCTGTAGATCCGAATTTGTGT 	68
----------------------ACCCTGTAGATCCGAATTTGT 	98
-------------------------CTGTAGATCCGAATTTGTG 	4
---------------------------------------------------------GCAAATTCGTGTCTTGGGGAAT 	2
----------------------------------------------------------CAAATTCGTGTCTTGGGGAATA 	2
----------------------------------------------------------CAAATTCGTGTCTTGGGGAAT 	29
----------------------------------------------------------CAAATTCGTGTCTTGGGGAA 	4
-----------------------------------------------------------AAATTCGTGTCTTGGGGAATAT 	1
-----------------------------------------------------------AAATTCGTGTCTTGGGGAATA 	5
-----------------------------------------------------------AAATTCGTGTCTTGGGGAAT 	3



HuntMi prediction: true miRNA