miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TACCCTGTAGATCCGAATTTGT

selected species: Gallus gallus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

GATGCATCTGTCTTCTATATGTACCCTGTAGATCCGAATTTGTGTAAAGGAAGTTGGGTCACAAATTCGTATCTAGGGGAATATGTAGTTGACACAAACAC
---------------------TACCCTGTAGATCCGAATTTGT 	890
---------------------TACCCTGTAGATCCGAATTTGTG 	563
---------------------TACCCTGTAGATCCGAATTTGTGT 	55
---------------------TACCCTGTAGATCCGAATTT 	3
---------------------TACCCTGTAGATCCGAATTTG 	12
----------------------ACCCTGTAGATCCGAATTTGT 	15
----------------------ACCCTGTAGATCCGAATTTGTG 	23
----------------------ACCCTGTAGATCCGAATTTGTGT 	12
-------------------------------------------------------------CAAATTCGTATCTAGGGGAAT 	2
--------------------------------------------------------------AAATTCGTATCTAGGGGAATA 	1
--------------------------------------------------------------AAATTCGTATCTAGGGGAAT 	1


Overlaps with: MNEST025889
Overlaps with miRBase pre-miRNAs: gga-mir-10a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM388803 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

GATGCATCTGTCTTCTATATGTACCCTGTAGATCCGAATTTGTGTAAAGGAAGTTGGGTCACAAATTCGTATCTAGGGGAATATGTAGTTGACACAAACAC
---------------------TACCCTGTAGATCCGAATTTGTGT 	417
---------------------TACCCTGTAGATCCGAATTTGTG 	3319
---------------------TACCCTGTAGATCCGAATTTGT 	28660
---------------------TACCCTGTAGATCCGAATTTG 	1748
---------------------TACCCTGTAGATCCGAATTT 	480
---------------------TACCCTGTAGATCCGAATT 	258
----------------------ACCCTGTAGATCCGAATTTGTGT 	140
----------------------ACCCTGTAGATCCGAATTTGTG 	1085
----------------------ACCCTGTAGATCCGAATTTGT 	1196
----------------------ACCCTGTAGATCCGAATTTG 	123
----------------------ACCCTGTAGATCCGAATTT 	23


Overlaps with: MNEST025889
Overlaps with miRBase pre-miRNAs: gga-mir-10a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

GATGCATCTGTCTTCTATATGTACCCTGTAGATCCGAATTTGTGTAAAGGAAGTTGGGTCACAAATTCGTATCTAGGGGAATATGTAGTTGACACAAACAC
-ATGCATCTGTCTTCTATATG 	1
---------------------TACCCTGTAGATCCGAATTTGTG 	83
---------------------TACCCTGTAGATCCGAATTTGT 	269
---------------------TACCCTGTAGATCCGAATTTGTGT 	9
---------------------TACCCTGTAGATCCGAATTTG 	8
---------------------TACCCTGTAGATCCGAATT 	1
----------------------ACCCTGTAGATCCGAATTTGT 	3
----------------------ACCCTGTAGATCCGAATTTGTG 	7
----------------------ACCCTGTAGATCCGAATTTGTGT 	4
------------------------CCTGTAGATCCGAATTTGTG 	1
-------------------------------------------GTAAAGGAAGTTGGGTCAC 	2
------------------------------------------------------------ACAAATTCGTATCTAGGGGAAT 	1
-------------------------------------------------------------CAAATTCGTATCTAGGGGAAT 	9
-------------------------------------------------------------CAAATTCGTATCTAGGGGAA 	1
-------------------------------------------------------------CAAATTCGTATCTAGGGGAATA 	2
--------------------------------------------------------------AAATTCGTATCTAGGGGAATA 	3
--------------------------------------------------------------AAATTCGTATCTAGGGGAATAT 	3
--------------------------------------------------------------AAATTCGTATCTAGGGGAAT 	2


Overlaps with: MNEST025889
Overlaps with miRBase pre-miRNAs: gga-mir-10a
HuntMi prediction: true miRNA