miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TACCCTGTAGATCCGAATTTGT

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

TCTTCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATATGTAGTTG
----------ATACCCTGTAGATCCGAATT 	1
----------ATACCCTGTAGATCCGAATTTG 	73
----------ATACCCTGTAGATCCGAATTTGT 	52
-----------TACCCTGTAGATCCGAATTTGTGT 	151
-----------TACCCTGTAGATCCGAATTTGT 	9509
-----------TACCCTGTAGATCCGAATTTG 	1649
-----------TACCCTGTAGATCCGAATT 	38
-----------TACCCTGTAGATCCGAATTTGTG 	4302
-----------TACCCTGTAGATCCGAATTT 	82
------------ACCCTGTAGATCCGAATTTG 	208
------------ACCCTGTAGATCCGAATTTGT 	1286
------------ACCCTGTAGATCCGAATTT 	23
------------ACCCTGTAGATCCGAATTTGTGT 	179
------------ACCCTGTAGATCCGAATTTGTG 	2228
-------------CCCTGTAGATCCGAATTTGTG 	5
-------------CCCTGTAGATCCGAATTTGTGT 	1
--------------CCTGTAGATCCGAATTTGTG 	2
--------------CCTGTAGATCCGAATTTGT 	3
---------------CTGTAGATCCGAATTTGTG 	1
---------------------------------------------------ACAAATTCGTATCTAGGGGAAT 	2
----------------------------------------------------CAAATTCGTATCTAGGGGAAT 	13
----------------------------------------------------CAAATTCGTATCTAGGGGA 	5
----------------------------------------------------CAAATTCGTATCTAGGGGAA 	1
-----------------------------------------------------AAATTCGTATCTAGGGGAAT 	1


Overlaps with: MNEST026943
Overlaps with miRBase pre-miRNAs: ptr-mir-10a mml-mir-10a cfa-mir-10a sla-mir-10a age-mir-10a hsa-mir-10a mdo-mir-10a rno-mir-10a ppy-mir-10a mmu-mir-10a ggo-mir-10a eca-mir-10a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

TCTTCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATATGTAGTTG
----------ATACCCTGTAGATCCGAATTTGTG 	1
----------ATACCCTGTAGATCCGAATTTG 	53
----------ATACCCTGTAGATCCGAATTTGT 	44
-----------TACCCTGTAGATCCGAATTTGTGT 	156
-----------TACCCTGTAGATCCGAATTT 	44
-----------TACCCTGTAGATCCGAATTTGT 	7311
-----------TACCCTGTAGATCCGAATTTG 	1587
-----------TACCCTGTAGATCCGAATT 	10
-----------TACCCTGTAGATCCGAATTTGTG 	4340
------------ACCCTGTAGATCCGAATTTG 	192
------------ACCCTGTAGATCCGAATTTGT 	925
------------ACCCTGTAGATCCGAATTT 	10
------------ACCCTGTAGATCCGAATTTGTGT 	108
------------ACCCTGTAGATCCGAATTTGTG 	2140
-------------CCCTGTAGATCCGAATTTGT 	2
-------------CCCTGTAGATCCGAATTTGTGT 	4
-------------CCCTGTAGATCCGAATTTGTG 	4
--------------CCTGTAGATCCGAATTTGTG 	4
----------------------------------------------------CAAATTCGTATCTAGGGGAAT 	10
----------------------------------------------------CAAATTCGTATCTAGGGGA 	4
------------------------------------------------------AATTCGTATCTAGGGGAAT 	2


Overlaps with: MNEST026943
Overlaps with miRBase pre-miRNAs: ptr-mir-10a mml-mir-10a cfa-mir-10a sla-mir-10a age-mir-10a hsa-mir-10a mdo-mir-10a rno-mir-10a ppy-mir-10a mmu-mir-10a ggo-mir-10a eca-mir-10a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

TCTTCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATATGTAGTTG
----------ATACCCTGTAGATCCGAATTTGT 	6
----------ATACCCTGTAGATCCGAATTTG 	13
-----------TACCCTGTAGATCCGAATTTGTGT 	23
-----------TACCCTGTAGATCCGAATTTGT 	1789
-----------TACCCTGTAGATCCGAATTTG 	525
-----------TACCCTGTAGATCCGAATT 	6
-----------TACCCTGTAGATCCGAATTTGTG 	811
-----------TACCCTGTAGATCCGAATTT 	17
------------ACCCTGTAGATCCGAATTTGTGT 	26
------------ACCCTGTAGATCCGAATTTGTG 	480
------------ACCCTGTAGATCCGAATTTGT 	218
------------ACCCTGTAGATCCGAATTTG 	70
------------ACCCTGTAGATCCGAATTT 	3
-------------CCCTGTAGATCCGAATTTGTG 	2
-------------CCCTGTAGATCCGAATTTGTGT 	1
--------------CCTGTAGATCCGAATTTGTG 	1
---------------CTGTAGATCCGAATTTGTG 	1
-----------------------------------------------------AAATTCGTATCTAGGGGAAT 	1


Overlaps with: MNEST026943
Overlaps with miRBase pre-miRNAs: ptr-mir-10a mml-mir-10a cfa-mir-10a sla-mir-10a age-mir-10a hsa-mir-10a mdo-mir-10a rno-mir-10a ppy-mir-10a mmu-mir-10a ggo-mir-10a eca-mir-10a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

TCTTCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATATGTAGTTG
----------ATACCCTGTAGATCCGAATTTGTG 	6
----------ATACCCTGTAGATCCGAATT 	2
----------ATACCCTGTAGATCCGAATTTG 	103
----------ATACCCTGTAGATCCGAATTTGT 	72
----------ATACCCTGTAGATCCGAATTT 	2
-----------TACCCTGTAGATCCGAATTTGTGTA 	2
-----------TACCCTGTAGATCCGAATTTGT 	8819
-----------TACCCTGTAGATCCGAATTTGTG 	4672
-----------TACCCTGTAGATCCGAATTTGTGT 	204
-----------TACCCTGTAGATCCGAATTTG 	1550
-----------TACCCTGTAGATCCGAATT 	29
-----------TACCCTGTAGATCCGAATTT 	75
------------ACCCTGTAGATCCGAATTTGTG 	2850
------------ACCCTGTAGATCCGAATTTG 	155
------------ACCCTGTAGATCCGAATTTGT 	1135
------------ACCCTGTAGATCCGAATTT 	9
------------ACCCTGTAGATCCGAATTTGTGT 	203
-------------CCCTGTAGATCCGAATTTGTGT 	2
-------------CCCTGTAGATCCGAATTTGTG 	18
--------------CCTGTAGATCCGAATTTGT 	2
--------------CCTGTAGATCCGAATTTGTG 	1
---------------CTGTAGATCCGAATTTGTG 	2
--------------------------------TGTAAGGAATTTTGTGGTCACA 	1
--------------------------------------------------CACAAATTCGTATCTAGGGGA 	2
---------------------------------------------------ACAAATTCGTATCTAGGGGAAT 	3
----------------------------------------------------CAAATTCGTATCTAGGGGAAT 	10
----------------------------------------------------CAAATTCGTATCTAGGGGAA 	1
----------------------------------------------------CAAATTCGTATCTAGGGGA 	1
-----------------------------------------------------AAATTCGTATCTAGGGGAATA 	2
-----------------------------------------------------AAATTCGTATCTAGGGGAAT 	1
-----------------------------------------------------AAATTCGTATCTAGGGGAA 	1


Overlaps with: MNEST026943
Overlaps with miRBase pre-miRNAs: ptr-mir-10a mml-mir-10a cfa-mir-10a sla-mir-10a age-mir-10a hsa-mir-10a mdo-mir-10a rno-mir-10a ppy-mir-10a mmu-mir-10a ggo-mir-10a eca-mir-10a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TACCCTGTAGATCCGAATTTGT AAATTCGTATCTAGGGGAATA up 2 1


Secondary structure

TCTTCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATCTAGGGGAATATGTAGTTG
----------ATACCCTGTAGATCCGAATTTGT 	6
----------ATACCCTGTAGATCCGAATTTG 	21
-----------TACCCTGTAGATCCGAATTTGTGT 	30
-----------TACCCTGTAGATCCGAATTTGT 	2073
-----------TACCCTGTAGATCCGAATTTG 	509
-----------TACCCTGTAGATCCGAATT 	9
-----------TACCCTGTAGATCCGAATTTGTG 	1091
-----------TACCCTGTAGATCCGAATTT 	15
------------ACCCTGTAGATCCGAATTTGTGT 	19
------------ACCCTGTAGATCCGAATTTGTG 	605
------------ACCCTGTAGATCCGAATTTGT 	260
------------ACCCTGTAGATCCGAATTTG 	61
------------ACCCTGTAGATCCGAATTT 	2
-------------CCCTGTAGATCCGAATTTGTG 	2
--------------CCTGTAGATCCGAATTTGTG 	2
-----------------------------------------------------AAATTCGTATCTAGGGGAAT 	1


Overlaps with: MNEST026943
Overlaps with miRBase pre-miRNAs: ptr-mir-10a mml-mir-10a cfa-mir-10a sla-mir-10a age-mir-10a hsa-mir-10a mdo-mir-10a rno-mir-10a ppy-mir-10a mmu-mir-10a ggo-mir-10a eca-mir-10a
HuntMi prediction: true miRNA