miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TACTGGCCTACTAAGTCCCAAC

selected species: Drosophila melanogaster



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TACTGGCCTACTAAGTCCCAAC TTGGGATTTTTTAGATCAGCAGT down 4 1


Secondary structure

CCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGA
----------GGTTGGGATTTTTTAGATCAGCA 	1
------------TTGGGATTTTTTAGATCAGCAG 	2
------------TTGGGATTTTTTAGATCAGCA 	3
-------------TGGGATTTTTTAGATCAGCAGT 	1
----------------------------------TTATTGCTATATAGCCATATTT 	1
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAA 	8
------------------------------------------------------------------TACTGGCCTACTAAGTCCC 	1
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAACA 	1
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAAC 	18
------------------------------------------------------------------TACTGGCCTACTAAGTCCCA 	3
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCA 	1
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACA 	5
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAAC 	4
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAA 	1
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACAT 	1


Overlaps with: MNEST036397 MNEST036398
Overlaps with miRBase pre-miRNAs: dme-mir-193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399106-16287 TACTGGCCTACTAAGTCCCAAC TTGGGATTTTTTAGATCAGCAGT down 4 1


Secondary structure

CCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGA
----------GGTTGGGATTTTTTAGATCAGCA 	1
------------TTGGGATTTTTTAGATCAGCA 	3
------------TTGGGATTTTTTAGATCAGCAG 	1
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAA 	8
------------------------------------------------------------------TACTGGCCTACTAAGTCCC 	2
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAACA 	1
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAAC 	22
------------------------------------------------------------------TACTGGCCTACTAAGTCCCA 	7
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACA 	11
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAAC 	2
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAA 	1
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACAT 	1


Overlaps with: MNEST036397 MNEST036398
Overlaps with miRBase pre-miRNAs: dme-mir-193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Drosophila melanogaster GSM360262-14327 TACTGGCCTACTAAGTCCCAAC TTGGGATTTTTTAGATCAGCAGT down 4 1


Secondary structure

CCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGA
------------TTGGGATTTTTTAGATCAGCAG 	1
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAA 	5
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAAC 	17
------------------------------------------------------------------TACTGGCCTACTAAGTCCCA 	3
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACA 	1


Overlaps with: MNEST036397 MNEST036398
Overlaps with miRBase pre-miRNAs: dme-mir-193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Drosophila melanogaster GSM360260-14326 TACTGGCCTACTAAGTCCCAAC TTGGGATTTTTTAGATCAGCAGT down 4 1


Secondary structure

CCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGA
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAAC 	5
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAA 	1
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACAT 	2


Overlaps with: MNEST036397 MNEST036398
Overlaps with miRBase pre-miRNAs: dme-mir-193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Drosophila melanogaster GSM286604-9792 TACTGGCCTACTAAGTCCCAAC TTGGGATTTTTTAGATCAGCAGT down 4 1


Secondary structure

CCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGA
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAA 	8
------------------------------------------------------------------TACTGGCCTACTAAGTCCC 	1
------------------------------------------------------------------TACTGGCCTACTAAGTCCCAAC 	12
------------------------------------------------------------------TACTGGCCTACTAAGTCCCA 	3
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACA 	1
-------------------------------------------------------------------ACTGGCCTACTAAGTCCCAACAT 	1


Overlaps with: MNEST036397 MNEST036398
Overlaps with miRBase pre-miRNAs: dme-mir-193
HuntMi prediction: true miRNA