miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAGCACCATATAAATTCAGTAA

selected species: Caenorhabditis elegans



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TAGCACCATATAAATTCAGTAA ACTGAATTTATGTGTGTACTTGA down 4 1


Secondary structure

CCACTCGGAACCACTGAATTTATGTGTGTACTTGACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAATTTCGCGTC
------------ACTGAATTTATGTGTGTACTTGA 	26
--------------------------------------------------------TAGCACCATATAAATTCAGTAA 	44
--------------------------------------------------------TAGCACCATATAAATTCAG 	1

Overlaps with: MNEST038321 MNEST038322
Overlaps with miRBase pre-miRNAs: cel-mir-83
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TAGCACCATATAAATTCAGTAA ACTGAATTTATGTGTGTACTTGA down 4 1


Secondary structure

CCACTCGGAACCACTGAATTTATGTGTGTACTTGACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAATTTCGCGTC
------------ACTGAATTTATGTGTGTACTTGA 	118
-----------------------------------CGGCCAACAAGAGCATCGATC 	1
--------------------------------------------------------TAGCACCATATAAATTCAGTAA 	365
--------------------------------------------------------TAGCACCATATAAATTCAGTA 	7
--------------------------------------------------------TAGCACCATATAAATTCAGTAAT 	6
--------------------------------------------------------TAGCACCATATAAATTCAG 	2
--------------------------------------------------------TAGCACCATATAAATTCAGT 	1
---------------------------------------------------------AGCACCATATAAATTCAGTAA 	1
----------------------------------------------------------GCACCATATAAATTCAGTAA 	2

Overlaps with: MNEST038321 MNEST038322
Overlaps with miRBase pre-miRNAs: cel-mir-83
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TAGCACCATATAAATTCAGTAA ACTGAATTTATGTGTGTACTTGA down 4 1


Secondary structure

CCACTCGGAACCACTGAATTTATGTGTGTACTTGACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAATTTCGCGTC
------------ACTGAATTTATGTGTGTACTTGA 	1
---------------------------------GACGGCCAACAAGAGCATCG 	1
--------------------------------------------------------TAGCACCATATAAATTCAGTAA 	329
--------------------------------------------------------TAGCACCATATAAATTCAGTA 	11
--------------------------------------------------------TAGCACCATATAAATTCAGTAAT 	2
---------------------------------------------------------AGCACCATATAAATTCAGTAA 	1

Overlaps with: MNEST038321 MNEST038322
Overlaps with miRBase pre-miRNAs: cel-mir-83
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 TAGCACCATATAAATTCAGTAA ACTGAATTTATGTGTGTACTTGA down 4 1


Secondary structure

CCACTCGGAACCACTGAATTTATGTGTGTACTTGACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAATTTCGCGTC
------------ACTGAATTTATGTGTGTACTTGA 	6
--------------------------------------------------------TAGCACCATATAAATTCAGTAA 	48
--------------------------------------------------------TAGCACCATATAAATTCAG 	2

Overlaps with: MNEST038321 MNEST038322
Overlaps with miRBase pre-miRNAs: cel-mir-83
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297751-9445 TAGCACCATATAAATTCAGTAA ACTGAATTTATGTGTGTACTTGA down 4 1


Secondary structure

CCACTCGGAACCACTGAATTTATGTGTGTACTTGACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAATTTCGCGTC
------------ACTGAATTTATGTGTGTACTTGA 	7
-----------------------------------CGGCCAACAAGAGCATCGATC 	2
-------------------------------------------------------CTAGCACCATATAAATTCAGTAA 	1
--------------------------------------------------------TAGCACCATATAAATTCAGTA 	66
--------------------------------------------------------TAGCACCATATAAATTCAGTAATT 	1
--------------------------------------------------------TAGCACCATATAAATTCAGTAAT 	20
--------------------------------------------------------TAGCACCATATAAATTCAGT 	11
--------------------------------------------------------TAGCACCATATAAATTCAGTAA 	3266
--------------------------------------------------------TAGCACCATATAAATTCAG 	1
---------------------------------------------------------AGCACCATATAAATTCAGTAA 	2
-----------------------------------------------------------CACCATATAAATTCAGTAA 	7

Overlaps with: MNEST038321 MNEST038322
Overlaps with miRBase pre-miRNAs: cel-mir-83
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297752-9446 TAGCACCATATAAATTCAGTAA ACTGAATTTATGTGTGTACTTGA down 4 1


Secondary structure

CCACTCGGAACCACTGAATTTATGTGTGTACTTGACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAATTTCGCGTC
------------ACTGAATTTATGTGTGTACTTG 	1
------------ACTGAATTTATGTGTGTACTTGA 	17
-------------------------------------------------------CTAGCACCATATAAATTCAGTAA 	4
--------------------------------------------------------TAGCACCATATAAATTCAGTA 	116
--------------------------------------------------------TAGCACCATATAAATTCAGTAAT 	34
--------------------------------------------------------TAGCACCATATAAATTCAGT 	19
--------------------------------------------------------TAGCACCATATAAATTCAGTAA 	5611
--------------------------------------------------------TAGCACCATATAAATTCAG 	4
---------------------------------------------------------AGCACCATATAAATTCAGTAAT 	1
---------------------------------------------------------AGCACCATATAAATTCAGTAA 	1
----------------------------------------------------------GCACCATATAAATTCAGTAA 	1
-----------------------------------------------------------CACCATATAAATTCAGTAA 	19

Overlaps with: MNEST038321 MNEST038322
Overlaps with miRBase pre-miRNAs: cel-mir-83
HuntMi prediction: true miRNA