miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCACCATTCGAAATCAGTGC

selected species: Drosophila melanogaster



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM466496_r2d2_homozygotes_untreated TAGCACCATTCGAAATCAGTGC ACTGAGATCGATTGGTGCATAGA down 5 1


Secondary structure

CCCTGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATCAGGAGAACCCACTCAATTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCA
---------------------AACTGAGATCGATTGGTGCATAG 	13
---------------------AACTGAGATCGATTGGTGCATA 	2
---------------------AACTGAGATCGATTGGTGCATAGAT 	2
---------------------AACTGAGATCGATTGGTGCATAGA 	8
---------------------AACTGAGATCGATTGGTGCAT 	30
----------------------ACTGAGATCGATTGGTGCATAGAT 	2
----------------------ACTGAGATCGATTGGTGCATAGATA 	1
----------------------ACTGAGATCGATTGGTGCATA 	45
----------------------ACTGAGATCGATTGGTGCATAGA 	188
----------------------ACTGAGATCGATTGGTGCAT 	56
----------------------ACTGAGATCGATTGGTGCATAG 	158
----------------------ACTGAGATCGATTGGTGCA 	5
-----------------------CTGAGATCGATTGGTGCATAGA 	1
------------------------TGAGATCGATTGGTGCATAG 	1
------------------------TGAGATCGATTGGTGCATAGA 	4
---------------------------------------------TATCAGGAGAACCCACTCAATT 	1
---------------------------------------------TATCAGGAGAACCCACTCAAT 	6
---------------------------------------------TATCAGGAGAACCCACTCAATTT 	3
--------------------------------------------------------------------AACTCTAGCACCATTCGAAATCAGT 	2
------------------------------------------------------------------------CTAGCACCATTCGAAATCAGTGC 	11
------------------------------------------------------------------------CTAGCACCATTCGAAATCAGTGCT 	3
-------------------------------------------------------------------------TAGCACCATTCGAAATCAGTGC 	3550
-------------------------------------------------------------------------TAGCACCATTCGAAATCAGTGCTTT 	1
-------------------------------------------------------------------------TAGCACCATTCGAAATCAGT 	537
-------------------------------------------------------------------------TAGCACCATTCGAAATCAGTGCTT 	26
-------------------------------------------------------------------------TAGCACCATTCGAAATCAGTGCT 	960
-------------------------------------------------------------------------TAGCACCATTCGAAATCAG 	100
-------------------------------------------------------------------------TAGCACCATTCGAAATCAGTG 	835
--------------------------------------------------------------------------AGCACCATTCGAAATCAGTGC 	85
--------------------------------------------------------------------------AGCACCATTCGAAATCAGTG 	29
--------------------------------------------------------------------------AGCACCATTCGAAATCAGTGCT 	32
--------------------------------------------------------------------------AGCACCATTCGAAATCAGT 	11
--------------------------------------------------------------------------AGCACCATTCGAAATCAGTGCTT 	2
---------------------------------------------------------------------------GCACCATTCGAAATCAGTGC 	3
---------------------------------------------------------------------------GCACCATTCGAAATCAGTG 	3
----------------------------------------------------------------------------CACCATTCGAAATCAGTGCT 	1


Overlaps with: MNEST036434 MNEST036435
Overlaps with miRBase pre-miRNAs: dme-mir-285
HuntMi prediction: true miRNA