miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCACCATTCGAATTCAGTGC

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449726_Anterior_silkgland_clean TAGCACCATTCGAATTCAGTGC ACTGTATTCGAGTGTGTGGAAGA down 5 1


Secondary structure

CCAGAAGAGAGAGCAGTGTAGAAAAATGTCCATGTTTTGACAACTGTATTCGAGTGTGTGGAAGAGTTTTAAAAATCCTCTAGCACCATTCGAATTCAGTGCTCGAACGTGGTTATCCAACACGAAGATTTCTCCAAACGT
--------------------------------------------------------------------------------TAGCACCATTCGAATTCAGTGC 	65
--------------------------------------------------------------------------------TAGCACCATTCGAATTCAGT 	14
--------------------------------------------------------------------------------TAGCACCATTCGAATTCAGTG 	6
--------------------------------------------------------------------------------TAGCACCATTCGAATTCAG 	1

Overlaps with: MNEST035560
Overlaps with miRBase pre-miRNAs: bmo-mir-285
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449727_Posterior_silkgland_clean TAGCACCATTCGAATTCAGTGC ACTGTATTCGAGTGTGTGGAAGA down 5 1


Secondary structure

CCAGAAGAGAGAGCAGTGTAGAAAAATGTCCATGTTTTGACAACTGTATTCGAGTGTGTGGAAGAGTTTTAAAAATCCTCTAGCACCATTCGAATTCAGTGCTCGAACGTGGTTATCCAACACGAAGATTTCTCCAAACGT
--------------------------------------------------------------------------------TAGCACCATTCGAATTCAGTGC 	5

Overlaps with: MNEST035560
Overlaps with miRBase pre-miRNAs: bmo-mir-285
HuntMi prediction: true miRNA