miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCACCATTTGAAACCAGT

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TAGCACCATTTGAAACCAGT TGGTTTCGTATTGGTGCATAGA down 2 2


Secondary structure

ATCGTTAAACGTTGGTGAATACTGGTTTCGTATTGGTGCATAGAAGTATTAATTTTGTAACTTGTCTAGCACCATTTGAAACCAGTACTTATCGACGGGATGTCT
--------------------ACTGGTTTCGTATTGGTGCATAG 	3
--------------------ACTGGTTTCGTATTGGTGCATA 	2
--------------------ACTGGTTTCGTATTGGTGCAT 	2
--------------------ACTGGTTTCGTATTGGTGCATAGAA 	1
--------------------ACTGGTTTCGTATTGGTGCATAGA 	1
---------------------CTGGTTTCGTATTGGTGCATAGA 	1
---------------------CTGGTTTCGTATTGGTGCATAG 	1
---------------------CTGGTTTCGTATTGGTGCATA 	1
---------------------CTGGTTTCGTATTGGTGCAT 	1
------------------------------------------------------------------TAGCACCATTTGAAACCAGTAC 	5
------------------------------------------------------------------TAGCACCATTTGAAACCAGTA 	7
------------------------------------------------------------------TAGCACCATTTGAAACCAGT 	18
------------------------------------------------------------------TAGCACCATTTGAAACCAG 	1

Overlaps with: MNEST035053
Overlaps with miRBase pre-miRNAs: api-mir-29
HuntMi prediction: true miRNA