miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAGCACCATTTGAAATCAGT

selected species: Homo sapiens



18 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM651905 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTA 	3
--------------------GCTGGTTTCACATGGTGGCTT 	2
---------------------CTGGTTTCACATGGTGGCTTA 	3
-----------------------------------------------------------ATCTAGCACCATTTGAAATC 	2
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	10
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	3
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	1
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	15
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	60
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	25
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	111
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	3414
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	382
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	9
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	139
---------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	3
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTTT 	1
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	1
----------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	14
----------------------------------------------------------------GCACCATTTGAAATCAGTG 	9


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM651905 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTA 	2
--------------------GCTGGTTTCATATGGTGGTTTAG 	1
--------------------GCTGGTTTCATATGGTGGTTTAGA 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	10
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	3
------------------------------------------------------------CTAGCACCATTTGAAATCA 	1
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	60
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	25
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	111
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	3414
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	382
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	9
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	139
--------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	3
--------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	1
---------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	14
---------------------------------------------------------------GCACCATTTGAAATCAGTG 	9


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM531974 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTAG 	2
--------------------GCTGGTTTCACATGGTGGCTTA 	1
---------------------CTGGTTTCACATGGTGGCTTA 	1
----------------------TGGTTTCACATGGTGGCTTAGA 	1
------------------------------------------------------------TCTAGCACCATTTGAAATCAGT 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	9
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	3
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAG 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	1
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	33
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	30
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	162
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	851
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	40
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	2
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	12
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	2
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	1


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM531974 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTA 	2
-----------------------GGTTTCATATGGTGGTTTA 	1
-----------------------------------------------------------TCTAGCACCATTTGAAATCAGT 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	9
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	3
------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAG 	1
------------------------------------------------------------CTAGCACCATTTGAAATCA 	1
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	33
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	30
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	162
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	851
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	40
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	12
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	2
--------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	1


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM651908 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTA 	10
--------------------GCTGGTTTCACATGGTGGCTTAG 	1
---------------------CTGGTTTCACATGGTGGCTTA 	5
---------------------CTGGTTTCACATGGTGGCTT 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	21
-------------------------------------------------------------CTAGCACCATTTGAAATCAG 	7
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	3
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	1
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	48
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	11
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	172
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	5592
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	620
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	5
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	13
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	189
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	7
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTTT 	1
----------------------------------------------------------------GCACCATTTGAAATCAGTG 	10
----------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	5
----------------------------------------------------------------GCACCATTTGAAATCAGTGT 	1


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM651908 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTAG 	6
--------------------GCTGGTTTCATATGGTGGTTTA 	4
----------------------------------------------------------GTCTAGCACCATTTGAAAT 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	21
------------------------------------------------------------CTAGCACCATTTGAAATCAG 	7
------------------------------------------------------------CTAGCACCATTTGAAATCA 	3
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	1
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	48
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	11
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	172
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	5592
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	620
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	13
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	189
--------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	7
---------------------------------------------------------------GCACCATTTGAAATCAGTG 	10
---------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	5
---------------------------------------------------------------GCACCATTTGAAATCAGTGT 	1


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM651906 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTA 	2
--------------------GCTGGTTTCACATGGTGGCT 	1
---------------------CTGGTTTCACATGGTGGCTT 	4
---------------------CTGGTTTCACATGGTGGCTTA 	1
----------------------TGGTTTCACATGGTGGCTTA 	1
------------------------------------------------------------TCTAGCACCATTTGAAATCAGT 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	22
-------------------------------------------------------------CTAGCACCATTTGAAATCAG 	5
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	4
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	1
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	12
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	76
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	25
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	103
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	3026
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	272
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	23
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	127
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	6
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTTT 	1
---------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	1
----------------------------------------------------------------GCACCATTTGAAATCAGTGTTT 	4
----------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	6
----------------------------------------------------------------GCACCATTTGAAATCAGTG 	3
------------------------------------------------------------------ACCATTTGAAATCAGTGTT 	3


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Homo sapiens GSM651906 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTAG 	2
--------------------GCTGGTTTCATATGGTGGT 	2
--------------------GCTGGTTTCATATGGTGGTTTA 	1
---------------------CTGGTTTCATATGGTGGTTTA 	1
-----------------------------------------------------------TCTAGCACCATTTGAAATCAGT 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	22
------------------------------------------------------------CTAGCACCATTTGAAATCAG 	5
------------------------------------------------------------CTAGCACCATTTGAAATCA 	4
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	1
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	76
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	25
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	103
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	3026
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	272
--------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	23
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	127
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	6
--------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	1
---------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	6
---------------------------------------------------------------GCACCATTTGAAATCAGTG 	3
-----------------------------------------------------------------ACCATTTGAAATCAGTGTT 	3


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Homo sapiens GSM531982 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTA 	2
--------------------GCTGGTTTCACATGGTGGC 	1
---------------------CTGGTTTCACATGGTGGCTTAG 	4
---------------------CTGGTTTCACATGGTGGCTTA 	4
---------------------CTGGTTTCACATGGTGGCTTAGA 	2
---------------------CTGGTTTCACATGGTGGCT 	1
---------------------CTGGTTTCACATGGTGGCTT 	1
----------------------TGGTTTCACATGGTGGCTTA 	2
----------------------TGGTTTCACATGGTGGCTT 	1
----------------------TGGTTTCACATGGTGGCTTAGAT 	1
-----------------------------------------------------------ATCTAGCACCATTTGAAATCAGTG 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	5
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	12
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	87
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	54
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	246
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	1874
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	102
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	33
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	2
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	2
---------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	1
----------------------------------------------------------------GCACCATTTGAAATCAGTG 	1
------------------------------------------------------------------ACCATTTGAAATCAGTGTT 	1


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Homo sapiens GSM531982 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTAGA 	6
--------------------GCTGGTTTCATATGGTGGTTTAG 	2
--------------------GCTGGTTTCATATGGTGGTTT 	1
---------------------CTGGTTTCATATGGTGGTTTAGA 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	5
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	87
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	54
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	246
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	1874
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	102
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	33
--------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	2
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	2
--------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	1
---------------------------------------------------------------GCACCATTTGAAATCAGTG 	1
-----------------------------------------------------------------ACCATTTGAAATCAGTGTT 	1


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Homo sapiens GSM531978 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTAG 	6
--------------------GCTGGTTTCACATGGTGGCTT 	6
--------------------GCTGGTTTCACATGGTGGCTTA 	3
---------------------CTGGTTTCACATGGTGGCTTA 	4
---------------------CTGGTTTCACATGGTGGCTTAG 	3
---------------------CTGGTTTCACATGGTGGCTT 	3
---------------------CTGGTTTCACATGGTGGCT 	1
----------------------TGGTTTCACATGGTGGCTTAG 	3
----------------------TGGTTTCACATGGTGGCTTAGA 	2
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	12
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	8
-------------------------------------------------------------CTAGCACCATTTGAAATCAG 	7
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	5
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	132
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	109
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	331
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	1453
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	110
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	3
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	19
---------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	6
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	1
------------------------------------------------------------------ACCATTTGAAATCAGTGTT 	1


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Homo sapiens GSM531978 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTAGA 	9
--------------------GCTGGTTTCATATGGTGGTTTAG 	1
---------------------CTGGTTTCATATGGTGGTTTAGA 	3
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	12
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	8
------------------------------------------------------------CTAGCACCATTTGAAATCAG 	7
------------------------------------------------------------CTAGCACCATTTGAAATCA 	5
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	132
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	109
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	331
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	1453
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	110
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	19
--------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	6
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	1
-----------------------------------------------------------------ACCATTTGAAATCAGTGTT 	1


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Homo sapiens GSM651907 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTA 	2
--------------------GCTGGTTTCACATGGTGGCTT 	1
---------------------CTGGTTTCACATGGTGGCTTA 	6
---------------------CTGGTTTCACATGGTGGCT 	1
---------------------CTGGTTTCACATGGTGGCTT 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	41
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	5
-------------------------------------------------------------CTAGCACCATTTGAAATCAG 	5
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	2
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	24
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	144
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	46
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	411
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	8888
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	842
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTTT 	1
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	18
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	21
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	357
---------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	6
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTTT 	1
----------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	5
----------------------------------------------------------------GCACCATTTGAAATCAGTG 	7
----------------------------------------------------------------GCACCATTTGAAATCAGTGT 	1


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Homo sapiens GSM651907 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTAG 	3
--------------------GCTGGTTTCATATGGTGGTTTA 	2
---------------------CTGGTTTCATATGGTGGTTTA 	2
-----------------------GGTTTCATATGGTGGTTTA 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	41
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	5
------------------------------------------------------------CTAGCACCATTTGAAATCAG 	5
------------------------------------------------------------CTAGCACCATTTGAAATCA 	2
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	144
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	46
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	411
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	8888
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	842
--------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	18
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	21
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	357
--------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	6
---------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	5
---------------------------------------------------------------GCACCATTTGAAATCAGTG 	7
---------------------------------------------------------------GCACCATTTGAAATCAGTGT 	1


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Homo sapiens GSM531986-13294 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTT 	5
--------------------GCTGGTTTCACATGGTGGCTTA 	3
--------------------GCTGGTTTCACATGGTGGC 	1
---------------------CTGGTTTCACATGGTGGCTTAGATT 	2
---------------------CTGGTTTCACATGGTGGCTTA 	2
---------------------CTGGTTTCACATGGTGGCTTAGAT 	1
---------------------CTGGTTTCACATGGTGGCTT 	1
--------------------------------TGGTGGCTTAGATTTTTCC 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	44
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	3
-------------------------------------------------------------CTAGCACCATTTGAAATCAG 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	121
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	80
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	213
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	5193
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	245
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	26
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTTT 	2
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	81
---------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	2
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	2
---------------------------------------------------------------AGCACCATTTGAAATCAGTGTTT 	1


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Homo sapiens GSM531986-13294 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
--------------------GCTGGTTTCATATGGTGGTTTAG 	2
--------------------GCTGGTTTCATATGGTGGTTTAGAT 	1
--------------------GCTGGTTTCATATGGTGGTTTA 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	44
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	3
------------------------------------------------------------CTAGCACCATTTGAAATCAG 	1
------------------------------------------------------------CTAGCACCATTTGAAATCA 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	121
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	80
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	213
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	5193
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	245
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	81
--------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	2
--------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	2


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Homo sapiens GSM531975 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

GAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTG
--------------------GCTGGTTTCACATGGTGGCTTA 	1
--------------------GCTGGTTTCACATGGTGGCTTAGA 	1
---------------------CTGGTTTCACATGGTGGCTTA 	6
---------------------CTGGTTTCACATGGTGGCTTAGA 	1
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	10
-------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	80
-------------------------------------------------------------CTAGCACCATTTGAAATCAG 	13
-------------------------------------------------------------CTAGCACCATTTGAAATCA 	4
-------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	40
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	279
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	148
--------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	292
--------------------------------------------------------------TAGCACCATTTGAAATCAGT 	9348
--------------------------------------------------------------TAGCACCATTTGAAATCAG 	358
--------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTTT 	1
---------------------------------------------------------------AGCACCATTTGAAATCAGTG 	8
---------------------------------------------------------------AGCACCATTTGAAATCAGT 	57
----------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	2
-----------------------------------------------------------------CACCATTTGAAATCAGTGTTT 	1


Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Homo sapiens GSM531975 TAGCACCATTTGAAATCAGT TGGTTTCATATGGTGGTTTAGA down 1 2


Secondary structure

TCATAAAGCTTCTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGGAGACCAGC
---------------------CTGGTTTCATATGGTGGTTTAG 	1
------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	10
------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	80
------------------------------------------------------------CTAGCACCATTTGAAATCAG 	13
------------------------------------------------------------CTAGCACCATTTGAAATCA 	4
------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	279
-------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	148
-------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	292
-------------------------------------------------------------TAGCACCATTTGAAATCAGT 	9348
-------------------------------------------------------------TAGCACCATTTGAAATCAG 	358
--------------------------------------------------------------AGCACCATTTGAAATCAGTG 	8
--------------------------------------------------------------AGCACCATTTGAAATCAGT 	57
---------------------------------------------------------------GCACCATTTGAAATCAGTGTT 	2


Overlaps with: MNEST026649
Overlaps with miRBase pre-miRNAs: mml-mir-29b-1 mmu-mir-29b-1 hsa-mir-29b-1 ggo-mir-29b-1 lla-mir-29b cfa-mir-29b-1 ppy-mir-29b-1 eca-mir-29b ptr-mir-29b-1 ppa-mir-29b-1 bta-mir-29b-1 age-mir-29b
HuntMi prediction: true miRNA