miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAGCACCATTTGAAATCAGT

selected species: Mus musculus



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM539850 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
------------------------------------------------------------GCTGGTTTCACATGGTGGCTTAGATT 	1
------------------------------------------------------------GCTGGTTTCACATGGTGGC 	2
------------------------------------------------------------GCTGGTTTCACATGGTGGCTT 	2
------------------------------------------------------------GCTGGTTTCACATGGTGGCTTAG 	2
------------------------------------------------------------GCTGGTTTCACATGGTGGCTTA 	8
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTAGAT 	1
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTAG 	2
-------------------------------------------------------------CTGGTTTCACATGGTGGCT 	1
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTA 	5
-------------------------------------------------------------CTGGTTTCACATGGTGGCTT 	1
--------------------------------------------------------------TGGTTTCACATGGTGGCTTA 	1
--------------------------------------------------------------TGGTTTCACATGGTGGCTTAGAT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	17
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	11
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	12
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	11
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	64
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	9
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTTT 	1
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	515
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGT 	2
--------------------------------------------------------------------------------------------------------GCACCATTTGAAATCAGTG 	1
-----------------------------------------------------------------------------------------------------------------------------TTAGGAGTAAGAATTGCAGCAC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGAGGGTAGACTACAGAGGA 	1

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM539864 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTGTT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	4
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	234
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	55
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	2
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	23
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	54
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	1080
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTTT 	1
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	1
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGTG 	2
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGT 	8

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539861 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
------------------------------------------------------------GCTGGTTTCACATGGTGGCTTA 	5
------------------------------------------------------------GCTGGTTTCACATGGTGGCTT 	2
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTA 	3
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTAGA 	2
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTAG 	5
-------------------------------------------------------------CTGGTTTCACATGGTGGCT 	1
--------------------------------------------------------------TGGTTTCACATGGTGGCTTAGATT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	26
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAG 	2
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCA 	2
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	15
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	299
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	51
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	1414
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	2
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	54
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	55
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGT 	11
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	1
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGTG 	2
--------------------------------------------------------------------------------------------------------GCACCATTTGAAATCAGTG 	1
-----------------------------------------------------------------------------------------------------------------------------TTAGGAGTAAGAATTGCAGCAC 	1

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539847 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTA 	1
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	2
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	22
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	4
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	103
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGT 	1

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539875 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	1
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	1
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	3
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	3
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	16
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	2
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	111

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM539857 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAG 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCA 	1
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTTT 	1
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	9
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	18
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	84
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	386
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	9
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGT 	3

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Mus musculus GSM539876 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
------------------------------------------------------------GCTGGTTTCACATGGTGGCTTA 	2
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTAGA 	1
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTA 	3
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	2
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	1
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	16
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	15
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	90
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	402
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	31
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGTGT 	1
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGT 	4

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Mus musculus GSM539874 TAGCACCATTTGAAATCAGT TGGTTTCACATGGTGGCTTAGA down 1 2


Secondary structure

AGGCTGGTTCTTCTGACTGCACATCTCTGCTTTCTTCAGTGAGATCCTCTTCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAGTAAGAATTGCAGCACAGCAGAGGGTAGACTACAGAGGAACAGCTGTACA
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTAGAT 	1
-------------------------------------------------------------CTGGTTTCACATGGTGGCTTAG 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTGT 	1
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGT 	7
-----------------------------------------------------------------------------------------------------CTAGCACCATTTGAAATCAGTG 	12
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTTT 	3
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGTT 	24
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTGT 	22
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGTG 	68
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAGT 	224
------------------------------------------------------------------------------------------------------TAGCACCATTTGAAATCAG 	11
-------------------------------------------------------------------------------------------------------AGCACCATTTGAAATCAGTGTT 	1

Overlaps with: MNEST005111 MNEST008076
Overlaps with miRBase pre-miRNAs: mml-mir-29b-2 ptr-mir-29b-2 ggo-mir-29b-2 rno-mir-29b-2 hsa-mir-29b-2 ssc-mir-29b-2 mmu-mir-29b-2 ppa-mir-29b-2 sla-mir-29b bta-mir-29b-2 cfa-mir-29b-2 eca-mir-29b-2 mne-mir-29b ppy-mir-29b-2
HuntMi prediction: true miRNA