miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions




selected mature miRNA sequence: TAGCACCATTTGAAATCGGTTA

selected species: Danio rerio



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 TAGCACCATTTGAAATCGGTTA ACTGATTTCCTTTGGTGCTTAGA down 3 1


Secondary structure

CACCAAACGATGACTGATTTCCTTTGGTGCTTAGAGTCCCATCTGTCATCTAGCACCATTTGAAATCGGTTATAATGACTG
-------------------------------------------------CTAGCACCATTTGAAATCGGTTA 	1
-------------------------------------------------CTAGCACCATTTGAAATCGGTT 	8
-------------------------------------------------CTAGCACCATTTGAAATCGGT 	1
--------------------------------------------------TAGCACCATTTGAAATCGGTTA 	24
--------------------------------------------------TAGCACCATTTGAAATCGGTT 	12
--------------------------------------------------TAGCACCATTTGAAATCGGT 	1

Overlaps with: MNEST034242
Overlaps with miRBase pre-miRNAs: dre-mir-29a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TAGCACCATTTGAAATCGGTTA ACTGATTTCCTTTGGTGCTTAGA down 3 1


Secondary structure

CACCAAACGATGACTGATTTCCTTTGGTGCTTAGAGTCCCATCTGTCATCTAGCACCATTTGAAATCGGTTATAATGACTG
------------------------------------------------TCTAGCACCATTTGAAATCGGTTA 	1
-------------------------------------------------CTAGCACCATTTGAAATCGGTTA 	1
-------------------------------------------------CTAGCACCATTTGAAATCGGTT 	2
--------------------------------------------------TAGCACCATTTGAAATCGGTT 	1
--------------------------------------------------TAGCACCATTTGAAATCGGTTA 	9

Overlaps with: MNEST034242
Overlaps with miRBase pre-miRNAs: dre-mir-29a
HuntMi prediction: true miRNA