miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCAGCACACAAAACTATC

selected species: Ciona intestinalis



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TAGCAGCACACAAAACTATC TGGTTTCTGTGAGCTGCTTCA up 3 1


Secondary structure

CTACTTATCCACGTATCGTAGTAGCAGCACACAAAACTATCATTTTCTAATTTGCTGGTTTCTGTGAGCTGCTTCACTGTTACAGTGATTTATC
---------------------TAGCAGCACACAAAACTATCA 	6
---------------------TAGCAGCACACAAAACTATC 	17
------------------------------------------------------CTGGTTTCTGTGAGCTGCTTCAC 	1
------------------------------------------------------CTGGTTTCTGTGAGCTGCTTC 	5
------------------------------------------------------CTGGTTTCTGTGAGCTGCTT 	1

Overlaps with: MNEST024810 MNEST024811
Overlaps with miRBase pre-miRNAs: cin-mir-15
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343282-14442 TAGCAGCACACAAAACTATCA CTGGTTTCTGTGAGCTGCTTCA up 3 1


Secondary structure

CTACTTATCCACGTATCGTAGTAGCAGCACACAAAACTATCATTTTCTAATTTGCTGGTTTCTGTGAGCTGCTTCACTGTTACAGTGATTTATC
---------------------TAGCAGCACACAAAACTATCA 	9
---------------------TAGCAGCACACAAAACTATC 	7
------------------------------------------------------CTGGTTTCTGTGAGCTGCTTC 	5

Overlaps with: MNEST024810 MNEST024811
Overlaps with miRBase pre-miRNAs: cin-mir-15
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 TAGCAGCACACAAAACTATC TGGTTTCTGTGAGCTGCTTCA up 3 1


Secondary structure

CTACTTATCCACGTATCGTAGTAGCAGCACACAAAACTATCATTTTCTAATTTGCTGGTTTCTGTGAGCTGCTTCACTGTTACAGTGATTTATC
---------------------TAGCAGCACACAAAACTATCA 	1
---------------------TAGCAGCACACAAAACTATC 	36
---------------------TAGCAGCACACAAAACTAT 	1
------------------------------------------------------CTGGTTTCTGTGAGCTGCTTCAC 	2
------------------------------------------------------CTGGTTTCTGTGAGCTGCTTC 	7
------------------------------------------------------CTGGTTTCTGTGAGCTGCTT 	2
-------------------------------------------------------TGGTTTCTGTGAGCTGCTTCACT 	1

Overlaps with: MNEST024810 MNEST024811
Overlaps with miRBase pre-miRNAs: cin-mir-15
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343286 TAGCAGCACACAAAACTATC TGGTTTCTGTGAGCTGCTTCA up 3 1


Secondary structure

CTACTTATCCACGTATCGTAGTAGCAGCACACAAAACTATCATTTTCTAATTTGCTGGTTTCTGTGAGCTGCTTCACTGTTACAGTGATTTATC
---------------------TAGCAGCACACAAAACTATC 	81
---------------------TAGCAGCACACAAAACTAT 	1

Overlaps with: MNEST024810 MNEST024811
Overlaps with miRBase pre-miRNAs: cin-mir-15
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343285 TAGCAGCACACAAAACTATC TGGTTTCTGTGAGCTGCTTCA up 3 1


Secondary structure

CTACTTATCCACGTATCGTAGTAGCAGCACACAAAACTATCATTTTCTAATTTGCTGGTTTCTGTGAGCTGCTTCACTGTTACAGTGATTTATC
---------------------TAGCAGCACACAAAACTATCA 	4
---------------------TAGCAGCACACAAAACTATC 	228
---------------------TAGCAGCACACAAAACTAT 	14
------------------------------------------------------CTGGTTTCTGTGAGCTGCTTCA 	3
------------------------------------------------------CTGGTTTCTGTGAGCTGCTTC 	6
------------------------------------------------------CTGGTTTCTGTGAGCTGCTT 	3

Overlaps with: MNEST024810 MNEST024811
Overlaps with miRBase pre-miRNAs: cin-mir-15
HuntMi prediction: true miRNA