miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TAGCAGCACAGAATGGTTTGTG

selected species: Danio rerio

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540645	TAGCAGCACAGAATGGTTTGTG	CAGGCCGTACTGTGCTGCGGCA	up	2	0

Secondary structure

GTGCGGGGCCTGTCGGTACTGTAGCAGCACAGAATGGTTTGTGAGTTATAACGGGGGTGCAGGCCGTACTGTGCTGCGGCAACAACGACAGGACAGACG
---------------------TAGCAGCACAGAATGGTTTGTGA 	2
---------------------TAGCAGCACAGAATGGTTTGTG 	161
---------------------TAGCAGCACAGAATGGTTTGT 	21
---------------------TAGCAGCACAGAATGGTTTG 	2
----------------------AGCAGCACAGAATGGTTTGTG 	1
-----------------------GCAGCACAGAATGGTTTGTG 	1
-----------------------------------------------------------CAGGCCGTACTGTGCTGCGGCA 	4
-----------------------------------------------------------CAGGCCGTACTGTGCTGCGGC 	5
-----------------------------------------------------------CAGGCCGTACTGTGCTGCGG 	1

Overlaps with: MNEST034202
Overlaps with miRBase pre-miRNAs: dre-mir-15a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540645	TAGCAGCACAGAATGGTTTGTG	CAGGCCATGATGTGCTGCAGCA	up	3	0

Secondary structure

GAGGCTCTCTAGGTGATGGTGTAGCAGCACAGAATGGTTTGTGGTGATACAGAGATGCAGGCCATGATGTGCTGCAGCATCAATTCCTGGGACCTAC
---------------------TAGCAGCACAGAATGGTTTGTGGT 	1
---------------------TAGCAGCACAGAATGGTTTGTG 	161
---------------------TAGCAGCACAGAATGGTTTGT 	21
---------------------TAGCAGCACAGAATGGTTTG 	2
---------------------TAGCAGCACAGAATGGTTTGTGG 	17
----------------------AGCAGCACAGAATGGTTTGTGG 	1
----------------------AGCAGCACAGAATGGTTTGTG 	1
-----------------------GCAGCACAGAATGGTTTGTG 	1

Overlaps with miRBase pre-miRNAs: dre-mir-15a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540646	TAGCAGCACAGAATGGTTTGTG	CAGGCCGTACTGTGCTGCGGCA	up	2	0

Secondary structure

GTGCGGGGCCTGTCGGTACTGTAGCAGCACAGAATGGTTTGTGAGTTATAACGGGGGTGCAGGCCGTACTGTGCTGCGGCAACAACGACAGGACAGACG
-------------------TGTAGCAGCACAGAATGGTTTGT 	3
--------------------GTAGCAGCACAGAATGGTTTGT 	1
---------------------TAGCAGCACAGAATGGTTTGTG 	1102
---------------------TAGCAGCACAGAATGGTTTG 	2
---------------------TAGCAGCACAGAATGGTTTGTGA 	10
---------------------TAGCAGCACAGAATGGTTTGT 	116
----------------------AGCAGCACAGAATGGTTTGTG 	3
---------------------------------------------------------TGCAGGCCGTACTGTGCTGCGGC 	1
----------------------------------------------------------GCAGGCCGTACTGTGCTGCGGC 	2
-----------------------------------------------------------CAGGCCGTACTGTGCTGCGGCA 	302
-----------------------------------------------------------CAGGCCGTACTGTGCTGCGGC 	147
-----------------------------------------------------------CAGGCCGTACTGTGCTGCGG 	5
-----------------------------------------------------------CAGGCCGTACTGTGCTGCG 	1
------------------------------------------------------------AGGCCGTACTGTGCTGCGGC 	1

Overlaps with: MNEST034202
Overlaps with miRBase pre-miRNAs: dre-mir-15a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Danio rerio	GSM540646	TAGCAGCACAGAATGGTTTGTG	CAGGCCATGATGTGCTGCAGCA	up	3	0

Secondary structure

GAGGCTCTCTAGGTGATGGTGTAGCAGCACAGAATGGTTTGTGGTGATACAGAGATGCAGGCCATGATGTGCTGCAGCATCAATTCCTGGGACCTAC
-------------------TGTAGCAGCACAGAATGGTTTGT 	3
--------------------GTAGCAGCACAGAATGGTTTGT 	1
---------------------TAGCAGCACAGAATGGTTTGTG 	1102
---------------------TAGCAGCACAGAATGGTTTGTGGT 	5
---------------------TAGCAGCACAGAATGGTTTGTGG 	113
---------------------TAGCAGCACAGAATGGTTTG 	2
---------------------TAGCAGCACAGAATGGTTTGT 	116
----------------------AGCAGCACAGAATGGTTTGTGG 	3
----------------------AGCAGCACAGAATGGTTTGTG 	3

Overlaps with miRBase pre-miRNAs: dre-mir-15a-2
HuntMi prediction: true miRNA