miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAGCAGCACATCATGGTTTACA

selected species: Sus scrofa



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636844 TAGCAGCACATCATGGTTTACA CGAATCATTATTTGCTGCTCTA up 4 0


Secondary structure

TATCCTGTATTTTTGAGGCCTTAAAGTACTGTAGCAGCACATCATGGTTTACATACTACAATCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCATTCAAAACTA
----------TTTTGAGGCCTTAAAGTACTG 	1
-------------------------------TAGCAGCACATCATGGTTTACA 	101
-------------------------------TAGCAGCACATCATGGTTTAC 	42
-------------------------------TAGCAGCACATCATGGTTT 	5
-------------------------------TAGCAGCACATCATGGTTTA 	7
----------------------------------CAGCACATCATGGTTTACA 	1

Overlaps with: MNEST033912
Overlaps with miRBase pre-miRNAs: ssc-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636847 TAGCAGCACATCATGGTTTACA CGAATCATTATTTGCTGCTCTA up 4 0


Secondary structure

TATCCTGTATTTTTGAGGCCTTAAAGTACTGTAGCAGCACATCATGGTTTACATACTACAATCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCATTCAAAACTA
----------TTTTGAGGCCTTAAAGTACTG 	1
------------TTGAGGCCTTAAAGTACTG 	1
-------------------------------TAGCAGCACATCATGGTTTACA 	178
-------------------------------TAGCAGCACATCATGGTTTAC 	47
-------------------------------TAGCAGCACATCATGGTTT 	9
-------------------------------TAGCAGCACATCATGGTTTA 	10
---------------------------------------------------------------------CGAATCATTATTTGCTGCTCT 	3

Overlaps with: MNEST033912
Overlaps with miRBase pre-miRNAs: ssc-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636849 TAGCAGCACATCATGGTTTACA CGAATCATTATTTGCTGCTCTA up 4 0


Secondary structure

TATCCTGTATTTTTGAGGCCTTAAAGTACTGTAGCAGCACATCATGGTTTACATACTACAATCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCATTCAAAACTA
-------------------------------TAGCAGCACATCATGGTTTACA 	41
-------------------------------TAGCAGCACATCATGGTTTAC 	29
-------------------------------TAGCAGCACATCATGGTTTA 	1
-------------------------------TAGCAGCACATCATGGTTT 	2

Overlaps with: MNEST033912
Overlaps with miRBase pre-miRNAs: ssc-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TAGCAGCACATCATGGTTTACA CGAATCATTATTTGCTGCTCTA up 4 0


Secondary structure

TATCCTGTATTTTTGAGGCCTTAAAGTACTGTAGCAGCACATCATGGTTTACATACTACAATCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCATTCAAAACTA
-----------TTTGAGGCCTTAAAGTACTG 	2
------------TTGAGGCCTTAAAGTACTG 	5
-------------------------------TAGCAGCACATCATGGTTTACA 	614
-------------------------------TAGCAGCACATCATGGTTTA 	36
-------------------------------TAGCAGCACATCATGGTTTAC 	223
-------------------------------TAGCAGCACATCATGGTTT 	30
--------------------------------AGCAGCACATCATGGTTTACA 	4
----------------------------------CAGCACATCATGGTTTACA 	1
---------------------------------------------------------------------CGAATCATTATTTGCTGCTCT 	12
---------------------------------------------------------------------CGAATCATTATTTGCTGCTCTAGA 	1
---------------------------------------------------------------------CGAATCATTATTTGCTGCTCTA 	9
---------------------------------------------------------------------CGAATCATTATTTGCTGCT 	1
----------------------------------------------------------------------GAATCATTATTTGCTGCTC 	2

Overlaps with: MNEST033912
Overlaps with miRBase pre-miRNAs: ssc-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TAGCAGCACATCATGGTTTACA CGAATCATTATTTGCTGCTCTA up 4 0


Secondary structure

TATCCTGTATTTTTGAGGCCTTAAAGTACTGTAGCAGCACATCATGGTTTACATACTACAATCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCATTCAAAACTA
-------------------------------TAGCAGCACATCATGGTTTACA 	9
-------------------------------TAGCAGCACATCATGGTTTAC 	9

Overlaps with: MNEST033912
Overlaps with miRBase pre-miRNAs: ssc-mir-15b
HuntMi prediction: true miRNA