miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCAGCACATCATGGTTTGCA

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TAGCAGCACATCATGGTTTGCA CGAATCATTATTTGCTGCTTTA up 3 0


Secondary structure

GTGTGAGGCCTTAAAGTACTCTAGCAGCACATCATGGTTTGCATGCTGTAGTGAAGATGCGAATCATTATTTGCTGCTTTAGAAATTTAAGGAAGATAA
---------------------TAGCAGCACATCATGGTTTGCAT 	29
---------------------TAGCAGCACATCATGGTTTGCA 	875
---------------------TAGCAGCACATCATGGTTT 	1
---------------------TAGCAGCACATCATGGTTTG 	1
---------------------TAGCAGCACATCATGGTTTGC 	8
----------------------AGCAGCACATCATGGTTTGCA 	8
-----------------------------------------------------------CGAATCATTATTTGCTGCTTTA 	1

Overlaps with: MNEST025892
Overlaps with miRBase pre-miRNAs: gga-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TAGCAGCACATCATGGTTTGCA CGAATCATTATTTGCTGCTTTA up 3 0


Secondary structure

GTGTGAGGCCTTAAAGTACTCTAGCAGCACATCATGGTTTGCATGCTGTAGTGAAGATGCGAATCATTATTTGCTGCTTTAGAAATTTAAGGAAGATAA
--GTGAGGCCTTAAAGTACTC 	2
--------------------CTAGCAGCACATCATGGTTTGCA 	1
---------------------TAGCAGCACATCATGGTTTGCAT 	92
---------------------TAGCAGCACATCATGGTTTGCATG 	1
---------------------TAGCAGCACATCATGGTTTGCA 	5759
---------------------TAGCAGCACATCATGGTTT 	13
---------------------TAGCAGCACATCATGGTTTGC 	197
---------------------TAGCAGCACATCATGGTTTG 	55
----------------------AGCAGCACATCATGGTTTGCA 	2
------------------------CAGCACATCATGGTTTGCA 	1
-----------------------------------------------------------CGAATCATTATTTGCTGCTTTA 	4

Overlaps with: MNEST025892
Overlaps with miRBase pre-miRNAs: gga-mir-15b
HuntMi prediction: true miRNA