miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCAGCACATCATGGTTTGTA

selected species: Danio rerio



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TAGCAGCACATCATGGTTTGTA CGAATCATGATGTGCTGTCACT up 2 0


Secondary structure

GGAGTCTGTCGTCATCTTTTTATTTAGCCCTGAGTGCCCTGTAGCAGCACATCATGGTTTGTAAGTTATAAGGGCAAATTCCGAATCATGATGTGCTGTCACTGGGAGCCTGGGAGTTTCTCCATTAACATGACAGCATTA
---------------------ATTTAGCCCTGAGTGCCCTG 	1
-----------------------------------------TAGCAGCACATCATGGTTTGTAAGTT 	1
-----------------------------------------TAGCAGCACATCATGGTTTGTAAGT 	4
-----------------------------------------TAGCAGCACATCATGGTTTGTAAG 	3
-----------------------------------------TAGCAGCACATCATGGTTTGTA 	16
----------------------------------------------------------------------------AATTCCGAATCATGATGTGCTG 	1
------------------------------------------------------------------------------TTCCGAATCATGATGTGCTGTCA 	1
------------------------------------------------------------------------------TTCCGAATCATGATGTGCTGTC 	1
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTCACT 	1
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTCACT 	3


Overlaps with: MNEST034204
Overlaps with miRBase pre-miRNAs: dre-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TAGCAGCACATCATGGTTTGTA CGAATCATGATGTGCTGTCACT up 2 0


Secondary structure

GGAGTCTGTCGTCATCTTTTTATTTAGCCCTGAGTGCCCTGTAGCAGCACATCATGGTTTGTAAGTTATAAGGGCAAATTCCGAATCATGATGTGCTGTCACTGGGAGCCTGGGAGTTTCTCCATTAACATGACAGCATTA
-----------------------------------------TAGCAGCACATCATGGTTTGTAA 	43
-----------------------------------------TAGCAGCACATCATGGTTTGTA 	513
-----------------------------------------TAGCAGCACATCATGGTTTGT 	27
-----------------------------------------TAGCAGCACATCATGGTTTG 	2
-----------------------------------------TAGCAGCACATCATGGTTTGTAAGT 	1
-----------------------------------------TAGCAGCACATCATGGTTTGTAAG 	2
------------------------------------------AGCAGCACATCATGGTTTGTA 	1
-------------------------------------------------------------------------------TCCGAATCATGATGTGCTGTCACT 	3
-------------------------------------------------------------------------------TCCGAATCATGATGTGCTGTCA 	2
-------------------------------------------------------------------------------TCCGAATCATGATGTGCTGTC 	1
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTCACT 	9
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTC 	1
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTCACT 	94
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTCA 	1
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTC 	1


Overlaps with: MNEST034204
Overlaps with miRBase pre-miRNAs: dre-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 TAGCAGCACATCATGGTTTGTA CGAATCATGATGTGCTGTCACT up 2 0


Secondary structure

GGAGTCTGTCGTCATCTTTTTATTTAGCCCTGAGTGCCCTGTAGCAGCACATCATGGTTTGTAAGTTATAAGGGCAAATTCCGAATCATGATGTGCTGTCACTGGGAGCCTGGGAGTTTCTCCATTAACATGACAGCATTA
----------------------TTTAGCCCTGAGTGCCCTG 	1
-----------------------------------------TAGCAGCACATCATGGTTTGTAA 	6
-----------------------------------------TAGCAGCACATCATGGTTTGTA 	323
-----------------------------------------TAGCAGCACATCATGGTTTGT 	118
------------------------------------------------------------------------------TTCCGAATCATGATGTGCTGTC 	1
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTCACT 	2
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTCAC 	3
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTCACT 	4


Overlaps with: MNEST034204
Overlaps with miRBase pre-miRNAs: dre-mir-15b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540646 TAGCAGCACATCATGGTTTGTA CGAATCATGATGTGCTGTCACT up 2 0


Secondary structure

GGAGTCTGTCGTCATCTTTTTATTTAGCCCTGAGTGCCCTGTAGCAGCACATCATGGTTTGTAAGTTATAAGGGCAAATTCCGAATCATGATGTGCTGTCACTGGGAGCCTGGGAGTTTCTCCATTAACATGACAGCATTA
---------------------ATTTAGCCCTGAGTGCCCTG 	1
-----------------------------------------TAGCAGCACATCATGGTTTGTAAGTT 	1
-----------------------------------------TAGCAGCACATCATGGTTTGTAA 	355
-----------------------------------------TAGCAGCACATCATGGTTTGTA 	4150
-----------------------------------------TAGCAGCACATCATGGTTTGT 	112
-----------------------------------------TAGCAGCACATCATGGTTTG 	6
-----------------------------------------TAGCAGCACATCATGGTTTGTAAGT 	6
-----------------------------------------TAGCAGCACATCATGGTTTGTAAG 	14
------------------------------------------AGCAGCACATCATGGTTTGTAA 	4
------------------------------------------AGCAGCACATCATGGTTTGTA 	11
-------------------------------------------GCAGCACATCATGGTTTGTA 	1
---------------------------------------------AGCACATCATGGTTTGTAA 	1
------------------------------------------------------------------------------TTCCGAATCATGATGTGCTGTC 	3
-------------------------------------------------------------------------------TCCGAATCATGATGTGCTGTCACT 	6
-------------------------------------------------------------------------------TCCGAATCATGATGTGCTGTCA 	7
-------------------------------------------------------------------------------TCCGAATCATGATGTGCTGTC 	2
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTCACT 	100
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTCA 	4
--------------------------------------------------------------------------------CCGAATCATGATGTGCTGTCAC 	13
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTCACT 	669
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTC 	1
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTCAC 	7
---------------------------------------------------------------------------------CGAATCATGATGTGCTGTCA 	1


Overlaps with: MNEST034204
Overlaps with miRBase pre-miRNAs: dre-mir-15b
HuntMi prediction: true miRNA