miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCAGCACATCATGGTTTGTA

selected species: Gallus gallus



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TAGCAGCACATCATGGTTTGTA CAGACCATTCTGGGCTGCCTCA up 5 0


Secondary structure

TCAGTGGGCTTTGAGGAGATGTAGCAGCACATCATGGTTTGTAGGGACAAGGAGATACAGACCATTCTGGGCTGCCTCATTACCTCAAGGATAAGAC
TCAGTGGGCTTTGAGGAGATG 	1
---------------------TAGCAGCACATCATGGTTTGTAG 	1
---------------------TAGCAGCACATCATGGTTTGTA 	91
---------------------TAGCAGCACATCATGGTTT 	1
---------------------TAGCAGCACATCATGGTTTG 	1
---------------------TAGCAGCACATCATGGTTTGT 	10
---------------------------------------------------------CAGACCATTCTGGGCTGCCT 	1
---------------------------------------------------------CAGACCATTCTGGGCTGCCTCA 	8

Overlaps with: MNEST025893
Overlaps with miRBase pre-miRNAs: tgu-mir-15c gga-mir-15c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TAGCAGCACATCATGGTTTGTA CAGACCATTCTGGGCTGCCTCA up 5 0


Secondary structure

TCAGTGGGCTTTGAGGAGATGTAGCAGCACATCATGGTTTGTAGGGACAAGGAGATACAGACCATTCTGGGCTGCCTCATTACCTCAAGGATAAGAC
---------------------TAGCAGCACATCATGGTTTGTAG 	3
---------------------TAGCAGCACATCATGGTTTGTA 	1038
---------------------TAGCAGCACATCATGGTTT 	13
---------------------TAGCAGCACATCATGGTTTGT 	165
---------------------TAGCAGCACATCATGGTTTG 	55
----------------------AGCAGCACATCATGGTTTGTA 	1
----------------------AGCAGCACATCATGGTTTGT 	1
---------------------------------------------------------CAGACCATTCTGGGCTGCC 	1
---------------------------------------------------------CAGACCATTCTGGGCTGCCTCA 	21

Overlaps with: MNEST025893
Overlaps with miRBase pre-miRNAs: tgu-mir-15c gga-mir-15c
HuntMi prediction: true miRNA