miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCAGCACGTAAATACTGGAG

selected species: Gallus gallus



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TAGCAGCACGTAAATACTGGAG CCAGTATTGCATTGCTGCTTTA up 5 0


Secondary structure

GGAGAGCTGTCAGCAGTGCTCTAGCAGCACGTAAATACTGGAGTGGGGGATCGCCTGTTGCTCTCCAGTATTGCATTGCTGCTTTAGTGAGGCTGGAAATCAGT
---------------------TAGCAGCACGTAAATACTGGA 	119
---------------------TAGCAGCACGTAAATACTGGAGTG 	42
---------------------TAGCAGCACGTAAATACTGGAGT 	190
---------------------TAGCAGCACGTAAATACTGGAG 	1209
---------------------TAGCAGCACGTAAATACTGG 	6
----------------------AGCAGCACGTAAATACTGGAGT 	2
----------------------AGCAGCACGTAAATACTGGAG 	9
----------------------AGCAGCACGTAAATACTGGAGTG 	2


Overlaps with: MNEST025896
Overlaps with miRBase pre-miRNAs: gga-mir-16c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM388803 TAGCAGCACGTAAATACTGGAG CCAGTATTGCATTGCTGCTTTA up 5 0


Secondary structure

GGAGAGCTGTCAGCAGTGCTCTAGCAGCACGTAAATACTGGAGTGGGGGATCGCCTGTTGCTCTCCAGTATTGCATTGCTGCTTTAGTGAGGCTGGAAATCAGT
---------------------TAGCAGCACGTAAATACTGGAG 	168
---------------------TAGCAGCACGTAAATACTGGA 	71
---------------------TAGCAGCACGTAAATACTG 	35


Overlaps with: MNEST025896
Overlaps with miRBase pre-miRNAs: gga-mir-16c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TAGCAGCACGTAAATACTGGAG CCAGTATTGCATTGCTGCTTTA up 5 0


Secondary structure

GGAGAGCTGTCAGCAGTGCTCTAGCAGCACGTAAATACTGGAGTGGGGGATCGCCTGTTGCTCTCCAGTATTGCATTGCTGCTTTAGTGAGGCTGGAAATCAGT
--------------------CTAGCAGCACGTAAATACTGGAG 	1
---------------------TAGCAGCACGTAAATACTGGA 	782
---------------------TAGCAGCACGTAAATACTGGAGT 	551
---------------------TAGCAGCACGTAAATACTGGAG 	6058
---------------------TAGCAGCACGTAAATACTGG 	12
---------------------TAGCAGCACGTAAATACTGGAGTG 	148
----------------------AGCAGCACGTAAATACTGGAG 	6
----------------------AGCAGCACGTAAATACTGGAGT 	14
----------------------AGCAGCACGTAAATACTGGAGTG 	1
-----------------------GCAGCACGTAAATACTGGAGT 	1
-----------------------GCAGCACGTAAATACTGGAG 	2


Overlaps with: MNEST025896
Overlaps with miRBase pre-miRNAs: gga-mir-16c
HuntMi prediction: true miRNA