miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCAGCACGTAAATATTGGAG

selected species: Danio rerio



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540645 TAGCAGCACGTAAATATTGGAG CCAGTATTGACCGTGCTGCTGGA up 2 1


Secondary structure

TTGGCCGTGTGACAGACTGGCTGCCTGGCTGTAGCAGCACGTAAATATTGGAGTCAAAGCACTTGCGAATCCTCCAGTATTGACCGTGCTGCTGGAGTTAGGCGGGCCGTTTACCGTCTGCGGG
------------------------------GTAGCAGCACGTAAATATTGGAG 	1
------------------------------GTAGCAGCACGTAAATATTGGA 	1
------------------------------GTAGCAGCACGTAAATATTGG 	1
-------------------------------TAGCAGCACGTAAATATTGGAGT 	21
-------------------------------TAGCAGCACGTAAATATTGGAG 	2417
-------------------------------TAGCAGCACGTAAATATTGGA 	128
-------------------------------TAGCAGCACGTAAATATTGG 	27
-------------------------------TAGCAGCACGTAAATATTG 	4
--------------------------------AGCAGCACGTAAATATTGGAG 	18
---------------------------------GCAGCACGTAAATATTGGAG 	4
-----------------------------------------------------TCAAAGCACTTGCGAATCCT 	1
-------------------------------------------------------------------------CCAGTATTGACCGTGCTGCTGGA 	1
-------------------------------------------------------------------------CCAGTATTGACCGTGCTGCTGG 	1
--------------------------------------------------------------------------CAGTATTGACCGTGCTGCTGGA 	12
---------------------------------------------------------------------------AGTATTGACCGTGCTGCTGG 	1
---------------------------------------------------------------------------AGTATTGACCGTGCTGCTGGAG 	2


Overlaps with: MNEST034207
Overlaps with miRBase pre-miRNAs: dre-mir-16b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540643 TAGCAGCACGTAAATATTGGAG CCAGTATTGACCGTGCTGCTGGA up 2 1


Secondary structure

TTGGCCGTGTGACAGACTGGCTGCCTGGCTGTAGCAGCACGTAAATATTGGAGTCAAAGCACTTGCGAATCCTCCAGTATTGACCGTGCTGCTGGAGTTAGGCGGGCCGTTTACCGTCTGCGGG
------------------------------GTAGCAGCACGTAAATATTGG 	1
------------------------------GTAGCAGCACGTAAATATTGGA 	1
-------------------------------TAGCAGCACGTAAATATTGGAGT 	114
-------------------------------TAGCAGCACGTAAATATTGGAG 	2672
-------------------------------TAGCAGCACGTAAATATTGG 	2
-------------------------------TAGCAGCACGTAAATATTGGA 	216
--------------------------------AGCAGCACGTAAATATTGGAGT 	3
--------------------------------AGCAGCACGTAAATATTGGAG 	7
---------------------------------GCAGCACGTAAATATTGGAG 	1
--------------------------------------------------------------------------CAGTATTGACCGTGCTGCTGGA 	2


Overlaps with: MNEST034207
Overlaps with miRBase pre-miRNAs: dre-mir-16b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540646 TAGCAGCACGTAAATATTGGAG CCAGTATTGACCGTGCTGCTGGA up 2 1


Secondary structure

TTGGCCGTGTGACAGACTGGCTGCCTGGCTGTAGCAGCACGTAAATATTGGAGTCAAAGCACTTGCGAATCCTCCAGTATTGACCGTGCTGCTGGAGTTAGGCGGGCCGTTTACCGTCTGCGGG
-------TGTGACAGACTGGCTGCCTGGCTG 	1
----------GACAGACTGGCTGCCTGGCTGT 	2
-----------ACAGACTGGCTGCCTGGCTGT 	6
-----------ACAGACTGGCTGCCTGGCTG 	4
------------CAGACTGGCTGCCTGGCTG 	1
------------------------------GTAGCAGCACGTAAATATTGGAG 	13
------------------------------GTAGCAGCACGTAAATATTGG 	10
------------------------------GTAGCAGCACGTAAATATTGGA 	24
-------------------------------TAGCAGCACGTAAATATTG 	5
-------------------------------TAGCAGCACGTAAATATTGGAGT 	568
-------------------------------TAGCAGCACGTAAATATTGGA 	1020
-------------------------------TAGCAGCACGTAAATATTGGAG 	27552
-------------------------------TAGCAGCACGTAAATATTGG 	124
--------------------------------AGCAGCACGTAAATATTGGAG 	160
--------------------------------AGCAGCACGTAAATATTGGA 	1
--------------------------------AGCAGCACGTAAATATTGG 	1
--------------------------------AGCAGCACGTAAATATTGGAGT 	8
---------------------------------GCAGCACGTAAATATTGGAG 	3
----------------------------------CAGCACGTAAATATTGGAG 	2
----------------------------------------------------GTCAAAGCACTTGCGAATCCTC 	5
-----------------------------------------------------TCAAAGCACTTGCGAATCCT 	4
------------------------------------------------------------------------TCCAGTATTGACCGTGCTGCTGG 	1
-------------------------------------------------------------------------CCAGTATTGACCGTGCTGCTGG 	45
-------------------------------------------------------------------------CCAGTATTGACCGTGCTGCTGGA 	68
-------------------------------------------------------------------------CCAGTATTGACCGTGCTGCTG 	2
--------------------------------------------------------------------------CAGTATTGACCGTGCTGCTGGA 	155
--------------------------------------------------------------------------CAGTATTGACCGTGCTGCTGG 	1
--------------------------------------------------------------------------CAGTATTGACCGTGCTGCTGGAG 	1
---------------------------------------------------------------------------AGTATTGACCGTGCTGCTGGAGT 	4
---------------------------------------------------------------------------AGTATTGACCGTGCTGCTGGAG 	20


Overlaps with: MNEST034207
Overlaps with miRBase pre-miRNAs: dre-mir-16b
HuntMi prediction: true miRNA