miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAGCAGCACGTAAATATTGGCG

selected species: Sus scrofa



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Sus scrofa GSM636849 TAGCAGCACGTAAATATTGGCG CCAATATTATTGTGCTGCTTTA up 5 0


Secondary structure

TTGTTCCGCTCTAGCAGCACGTAAATATTGGCGTAGTAAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGCGTGACA
---------TCTAGCAGCACGTAAATATTGGCG 	1
----------CTAGCAGCACGTAAATATTGG 	1
----------CTAGCAGCACGTAAATATTGGCG 	4
----------CTAGCAGCACGTAAATATTGGC 	4
-----------TAGCAGCACGTAAATATTGGCGT 	147
-----------TAGCAGCACGTAAATATTGGCGTA 	1
-----------TAGCAGCACGTAAATATTGGCG 	2394
-----------TAGCAGCACGTAAATATTGGC 	1000
-----------TAGCAGCACGTAAATATTGG 	503
-----------TAGCAGCACGTAAATATTG 	28
------------AGCAGCACGTAAATATTGG 	4
------------AGCAGCACGTAAATATTGGCG 	18
------------AGCAGCACGTAAATATTGGC 	5
-------------GCAGCACGTAAATATTGGCG 	4
-------------GCAGCACGTAAATATTGGC 	2
--------------CAGCACGTAAATATTGGCGT 	3
--------------CAGCACGTAAATATTGGCG 	14


Overlaps with: MNEST033913
Overlaps with miRBase pre-miRNAs: ssc-mir-16-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Sus scrofa GSM636849 TAGCAGCACGTAAATATTGGCG CCAGTATTAACTGTGCTGCTGAA up 3 1


Secondary structure

ATAGCAATGTCAGCAGTGCCTTAGCAGCACGTAAATATTGGCGTTAAGATTCTAAAATTATCTCCAGTATTAACTGTGCTGCTGAAGTAAGGTTGGCCATACTC
---------------------TAGCAGCACGTAAATATTGGCGT 	147
---------------------TAGCAGCACGTAAATATTGGCGTT 	4
---------------------TAGCAGCACGTAAATATTGGCG 	2394
---------------------TAGCAGCACGTAAATATTGGC 	1000
---------------------TAGCAGCACGTAAATATTGG 	503
---------------------TAGCAGCACGTAAATATTG 	28
----------------------AGCAGCACGTAAATATTGG 	4
----------------------AGCAGCACGTAAATATTGGCG 	18
----------------------AGCAGCACGTAAATATTGGC 	5
-----------------------GCAGCACGTAAATATTGGCG 	4
-----------------------GCAGCACGTAAATATTGGC 	2
------------------------CAGCACGTAAATATTGGCGT 	3
------------------------CAGCACGTAAATATTGGCG 	14


Overlaps with: MNEST026625
Overlaps with miRBase pre-miRNAs: cfa-mir-16-1 eca-mir-16-2 ssc-mir-16-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Sus scrofa GSM636848 TAGCAGCACGTAAATATTGGCG CCAATATTATTGTGCTGCTTTA up 5 0


Secondary structure

TTGTTCCGCTCTAGCAGCACGTAAATATTGGCGTAGTAAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGCGTGACA
----------CTAGCAGCACGTAAATATTGGC 	1
-----------TAGCAGCACGTAAATATTGGCG 	7782
-----------TAGCAGCACGTAAATATTGGCGTAG 	4
-----------TAGCAGCACGTAAATATTG 	67
-----------TAGCAGCACGTAAATATTGGCGT 	690
-----------TAGCAGCACGTAAATATTGGCGTA 	7
-----------TAGCAGCACGTAAATATTGGC 	2554
-----------TAGCAGCACGTAAATATTGG 	827
------------AGCAGCACGTAAATATTGG 	7
------------AGCAGCACGTAAATATTGGCG 	39
------------AGCAGCACGTAAATATTGGCGT 	5
------------AGCAGCACGTAAATATTGGC 	17
-------------GCAGCACGTAAATATTGGC 	4
-------------GCAGCACGTAAATATTGGCG 	12
--------------CAGCACGTAAATATTGGCG 	23
--------------CAGCACGTAAATATTGGCGT 	3
---------------AGCACGTAAATATTGGCGT 	2
----------------------------------------------------CACCAATATTATTGTGCTGCT 	1
----------------------------------------------------CACCAATATTATTGTGCTGCTTT 	1
-----------------------------------------------------ACCAATATTATTGTGCTGCTT 	1
-----------------------------------------------------ACCAATATTATTGTGCTGCTTT 	3
------------------------------------------------------CCAATATTATTGTGCTGCTTTA 	1
------------------------------------------------------CCAATATTATTGTGCTGCTT 	1
------------------------------------------------------CCAATATTATTGTGCTGCTTT 	2


Overlaps with: MNEST033913
Overlaps with miRBase pre-miRNAs: ssc-mir-16-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Sus scrofa GSM636848 TAGCAGCACGTAAATATTGGCG CCAGTATTAACTGTGCTGCTGAA up 3 1


Secondary structure

ATAGCAATGTCAGCAGTGCCTTAGCAGCACGTAAATATTGGCGTTAAGATTCTAAAATTATCTCCAGTATTAACTGTGCTGCTGAAGTAAGGTTGGCCATACTC
--AGCAATGTCAGCAGTGCCT 	2
---------------------TAGCAGCACGTAAATATTGGCG 	7782
---------------------TAGCAGCACGTAAATATTG 	67
---------------------TAGCAGCACGTAAATATTGGCGT 	690
---------------------TAGCAGCACGTAAATATTGGCGTT 	11
---------------------TAGCAGCACGTAAATATTGGC 	2554
---------------------TAGCAGCACGTAAATATTGG 	827
----------------------AGCAGCACGTAAATATTGG 	7
----------------------AGCAGCACGTAAATATTGGCG 	39
----------------------AGCAGCACGTAAATATTGGCGT 	5
----------------------AGCAGCACGTAAATATTGGC 	17
-----------------------GCAGCACGTAAATATTGGC 	4
-----------------------GCAGCACGTAAATATTGGCG 	12
------------------------CAGCACGTAAATATTGGCG 	23
------------------------CAGCACGTAAATATTGGCGT 	3
-------------------------AGCACGTAAATATTGGCGT 	2
---------------------------------------------------------------CCAGTATTAACTGTGCTGCTGA 	8
----------------------------------------------------------------CAGTATTAACTGTGCTGCTGA 	1


Overlaps with: MNEST026625
Overlaps with miRBase pre-miRNAs: cfa-mir-16-1 eca-mir-16-2 ssc-mir-16-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Sus scrofa GSM636846 TAGCAGCACGTAAATATTGGCG CCAATATTATTGTGCTGCTTTA up 5 0


Secondary structure

TTGTTCCGCTCTAGCAGCACGTAAATATTGGCGTAGTAAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGCGTGACA
-----------TAGCAGCACGTAAATATTGGCGT 	71
-----------TAGCAGCACGTAAATATTGGCG 	1070
-----------TAGCAGCACGTAAATATTGGC 	517
-----------TAGCAGCACGTAAATATTGG 	344
-----------TAGCAGCACGTAAATATTG 	21
------------AGCAGCACGTAAATATTGG 	2
------------AGCAGCACGTAAATATTGGCGT 	1
------------AGCAGCACGTAAATATTGGCG 	6
------------AGCAGCACGTAAATATTGGC 	1
-------------GCAGCACGTAAATATTGGC 	1
--------------CAGCACGTAAATATTGGCGT 	1
--------------CAGCACGTAAATATTGGCG 	8
------------------------------------------------------CCAATATTATTGTGCTGCTTTA 	1


Overlaps with: MNEST033913
Overlaps with miRBase pre-miRNAs: ssc-mir-16-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Sus scrofa GSM636846 TAGCAGCACGTAAATATTGGCG CCAGTATTAACTGTGCTGCTGAA up 3 1


Secondary structure

ATAGCAATGTCAGCAGTGCCTTAGCAGCACGTAAATATTGGCGTTAAGATTCTAAAATTATCTCCAGTATTAACTGTGCTGCTGAAGTAAGGTTGGCCATACTC
---------------------TAGCAGCACGTAAATATTGGCGTT 	1
---------------------TAGCAGCACGTAAATATTGGCGT 	71
---------------------TAGCAGCACGTAAATATTGGCG 	1070
---------------------TAGCAGCACGTAAATATTGGC 	517
---------------------TAGCAGCACGTAAATATTGG 	344
---------------------TAGCAGCACGTAAATATTG 	21
----------------------AGCAGCACGTAAATATTGG 	2
----------------------AGCAGCACGTAAATATTGGCGT 	1
----------------------AGCAGCACGTAAATATTGGCG 	6
----------------------AGCAGCACGTAAATATTGGC 	1
-----------------------GCAGCACGTAAATATTGGC 	1
------------------------CAGCACGTAAATATTGGCGT 	1
------------------------CAGCACGTAAATATTGGCG 	8


Overlaps with: MNEST026625
Overlaps with miRBase pre-miRNAs: cfa-mir-16-1 eca-mir-16-2 ssc-mir-16-2
HuntMi prediction: true miRNA