miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCAGCACGTAAATATTGGTG

selected species: Danio rerio



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TAGCAGCACGTAAATATTGGTG CCAATATTATGTGTGCTGCTTCA up 2 1


Secondary structure

CTTCCTCGCTTTAGCAGCACGTAAATATTGGTGTGTTATAGTCAAGGCCAACCCCAATATTATGTGTGCTGCTTCAGTAAGGCA
-----------TAGCAGCACGTAAATATTGGTG 	36
-----------TAGCAGCACGTAAATATTGGT 	9
-----------TAGCAGCACGTAAATATTGG 	15


Overlaps with: MNEST034206
Overlaps with miRBase pre-miRNAs: dre-mir-16a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TAGCAGCACGTAAATATTGGTG CCAATATTATGTGTGCTGCTTCA up 2 1


Secondary structure

CTTCCTCGCTTTAGCAGCACGTAAATATTGGTGTGTTATAGTCAAGGCCAACCCCAATATTATGTGTGCTGCTTCAGTAAGGCA
-----------TAGCAGCACGTAAATATTGGTGT 	1
-----------TAGCAGCACGTAAATATTGGTG 	237
-----------TAGCAGCACGTAAATATTGGT 	21
-----------TAGCAGCACGTAAATATTGG 	27
-----------TAGCAGCACGTAAATATTG 	4
------------AGCAGCACGTAAATATTGGTG 	2
---------------------------------TGTTATAGTCAAGGCCAACC 	4
-----------------------------------------------------CCAATATTATGTGTGCTGCTTCA 	3
-----------------------------------------------------CCAATATTATGTGTGCTGCTTC 	3


Overlaps with: MNEST034206
Overlaps with miRBase pre-miRNAs: dre-mir-16a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540642 TAGCAGCACGTAAATATTGGTG CCAATATTATGTGTGCTGCTTCA up 2 1


Secondary structure

CTTCCTCGCTTTAGCAGCACGTAAATATTGGTGTGTTATAGTCAAGGCCAACCCCAATATTATGTGTGCTGCTTCAGTAAGGCA
-----------TAGCAGCACGTAAATATTGGTGTGTT 	6
-----------TAGCAGCACGTAAATATTGGTGTGT 	20
-----------TAGCAGCACGTAAATATTGGTGTG 	37
-----------TAGCAGCACGTAAATATTGGTGT 	177
-----------TAGCAGCACGTAAATATTGGTG 	1263
-----------TAGCAGCACGTAAATATTGGT 	260
-----------TAGCAGCACGTAAATATTGG 	102
-----------TAGCAGCACGTAAATATTG 	9
------------AGCAGCACGTAAATATTGGTG 	1
------------AGCAGCACGTAAATATTGGT 	2
-------------------------------------------AAGGCCAACCCCAATATTATGTGT 	1
-----------------------------------------------------CCAATATTATGTGTGCTGCTTC 	1


Overlaps with: MNEST034206
Overlaps with miRBase pre-miRNAs: dre-mir-16a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 TAGCAGCACGTAAATATTGGTG CCAATATTATGTGTGCTGCTTCA up 2 1


Secondary structure

CTTCCTCGCTTTAGCAGCACGTAAATATTGGTGTGTTATAGTCAAGGCCAACCCCAATATTATGTGTGCTGCTTCAGTAAGGCA
-----------TAGCAGCACGTAAATATTGGTGT 	47
-----------TAGCAGCACGTAAATATTGGTG 	922
-----------TAGCAGCACGTAAATATTGGT 	54
-----------TAGCAGCACGTAAATATTGG 	2
-----------------------------------------------------CCAATATTATGTGTGCTGCTTC 	1


Overlaps with: MNEST034206
Overlaps with miRBase pre-miRNAs: dre-mir-16a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TAGCAGCACGTAAATATTGGTG CCAATATTATGTGTGCTGCTTCA up 2 1


Secondary structure

CTTCCTCGCTTTAGCAGCACGTAAATATTGGTGTGTTATAGTCAAGGCCAACCCCAATATTATGTGTGCTGCTTCAGTAAGGCA
-----------TAGCAGCACGTAAATATTGGTGT 	12
-----------TAGCAGCACGTAAATATTG 	5
-----------TAGCAGCACGTAAATATTGGTG 	2166
-----------TAGCAGCACGTAAATATTGGT 	154
-----------TAGCAGCACGTAAATATTGG 	124
------------AGCAGCACGTAAATATTGGTG 	6
------------AGCAGCACGTAAATATTGG 	1
--------------CAGCACGTAAATATTGGTG 	2
---------------------------------TGTTATAGTCAAGGCCAACC 	2
----------------------------------------------------CCCAATATTATGTGTGCTGCTTC 	1
-----------------------------------------------------CCAATATTATGTGTGCTGCTTCA 	18
-----------------------------------------------------CCAATATTATGTGTGCTGCTTC 	10
------------------------------------------------------CAATATTATGTGTGCTGCTTCA 	4


Overlaps with: MNEST034206
Overlaps with miRBase pre-miRNAs: dre-mir-16a
HuntMi prediction: true miRNA