miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TAGCAGCACGTAAATATTGGTG

selected species: Gallus gallus



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TAGCAGCACGTAAATATTGGTG CCAGTATTAACTGTGCTGCTGAA up 3 1


Secondary structure

AGGAATTAGTCAATCTTGTGATGCTGATGTCTGTCATACTCTAGCAGCACGTAAATATTGGTGTTAAAACTGTAAATATCTCCAGTATTAACTGTGCTGCTGAAGTAAGGCTAGCCACTTCTGCATGTGAGTCATGAGAAAG
-----------------------------------------TAGCAGCACGTAAATATTGGT 	3
-----------------------------------------TAGCAGCACGTAAATATTGGTG 	38
-----------------------------------------TAGCAGCACGTAAATATTGGTGT 	16
------------------------------------------AGCAGCACGTAAATATTGGTG 	2
--------------------------------------------------------------------------------TCCAGTATTAACTGTGCTGC 	1
---------------------------------------------------------------------------------CCAGTATTAACTGTGCTGCTGA 	4
---------------------------------------------------------------------------------CCAGTATTAACTGTGCTGCTGAA 	1

Overlaps with: MNEST025894
Overlaps with miRBase pre-miRNAs: gga-mir-16-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Gallus gallus GSM523741_layer_clean_reads_field_16-30 TAGCAGCACGTAAATATTGGTG CCAATATTATTGTGCTGCTTAA up 4 0


Secondary structure

TTGTTCCGCCCTAGCAGCACGTAAATATTGGTGTAGTAAAATAAACCTTAAACCCCAATATTATTGTGCTGCTTAAGCGTGGCA
-----------TAGCAGCACGTAAATATTGGT 	3
-----------TAGCAGCACGTAAATATTGGTG 	38
-----------TAGCAGCACGTAAATATTGGTGT 	16
------------AGCAGCACGTAAATATTGGTG 	2
-----------------------------------------------------CCCAATATTATTGTGCTGCTTAA 	3

Overlaps with: MNEST025895
Overlaps with miRBase pre-miRNAs: gga-mir-16-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TAGCAGCACGTAAATATTGGTG CCAGTATTAACTGTGCTGCTGAA up 3 1


Secondary structure

AGGAATTAGTCAATCTTGTGATGCTGATGTCTGTCATACTCTAGCAGCACGTAAATATTGGTGTTAAAACTGTAAATATCTCCAGTATTAACTGTGCTGCTGAAGTAAGGCTAGCCACTTCTGCATGTGAGTCATGAGAAAG
-----------------------------------------TAGCAGCACGTAAATATTGGT 	59
-----------------------------------------TAGCAGCACGTAAATATTGGTG 	174
-----------------------------------------TAGCAGCACGTAAATATTGGTGT 	56
-----------------------------------------TAGCAGCACGTAAATATTGG 	1
------------------------------------------AGCAGCACGTAAATATTGGTGT 	1
---------------------------------------------------------------------------------CCAGTATTAACTGTGCTGCTGA 	10
---------------------------------------------------------------------------------CCAGTATTAACTGTGCTGCTGAA 	4

Overlaps with: MNEST025894
Overlaps with miRBase pre-miRNAs: gga-mir-16-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TAGCAGCACGTAAATATTGGTG CCAATATTATTGTGCTGCTTAA up 4 0


Secondary structure

TTGTTCCGCCCTAGCAGCACGTAAATATTGGTGTAGTAAAATAAACCTTAAACCCCAATATTATTGTGCTGCTTAAGCGTGGCA
-----------TAGCAGCACGTAAATATTGGT 	59
-----------TAGCAGCACGTAAATATTGGTG 	174
-----------TAGCAGCACGTAAATATTGGTGT 	56
-----------TAGCAGCACGTAAATATTGG 	1
------------AGCAGCACGTAAATATTGGTGT 	1
--------------CAGCACGTAAATATTGGTGTA 	1
-----------------------------------------------------CCCAATATTATTGTGCTGCTT 	1
-----------------------------------------------------CCCAATATTATTGTGCTGCTTA 	1
-----------------------------------------------------CCCAATATTATTGTGCTGCTTAA 	1
------------------------------------------------------CCAATATTATTGTGCTGCTTAA 	1

Overlaps with: MNEST025895
Overlaps with miRBase pre-miRNAs: gga-mir-16-2
HuntMi prediction: true miRNA