miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TAGCAGCATGTAAATATTGGAG

selected species: Danio rerio

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540645	TAGCAGCATGTAAATATTGGAG	CCAATATTGCTCGTGCTGCTGAA	up	2	1

Secondary structure

GAGAACGACAAGTGAGAGAGGTTGTGTGTGTGTGCGTGTGTTGTCTTGCTTTAGCAGCATGTAAATATTGGAGTTACTCCTTGGCCAATGCCTCCAATATTGCTCGTGCTGCTGAAGCAAGAAGTCACCAAGCAGCACATGCACGTCATCCTTTTTTTATATTT
--------------------------------------------------TTAGCAGCATGTAAATATTGGA 	7
--------------------------------------------------TTAGCAGCATGTAAATATTGG 	3
---------------------------------------------------TAGCAGCATGTAAATATTGGAGT 	42
---------------------------------------------------TAGCAGCATGTAAATATTGGAG 	326
---------------------------------------------------TAGCAGCATGTAAATATTGG 	39
---------------------------------------------------TAGCAGCATGTAAATATTGGA 	195
---------------------------------------------------TAGCAGCATGTAAATATTG 	5
----------------------------------------------------AGCAGCATGTAAATATTGGAGT 	1
----------------------------------------------------AGCAGCATGTAAATATTGGAG 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540643	TAGCAGCATGTAAATATTGGAG	CCAATATTGCTCGTGCTGCTGAA	up	2	1

Secondary structure

GAGAACGACAAGTGAGAGAGGTTGTGTGTGTGTGCGTGTGTTGTCTTGCTTTAGCAGCATGTAAATATTGGAGTTACTCCTTGGCCAATGCCTCCAATATTGCTCGTGCTGCTGAAGCAAGAAGTCACCAAGCAGCACATGCACGTCATCCTTTTTTTATATTT
--------------------------------------------------TTAGCAGCATGTAAATATTGGA 	7
---------------------------------------------------TAGCAGCATGTAAATATTGGAGT 	210
---------------------------------------------------TAGCAGCATGTAAATATTGGAG 	750
---------------------------------------------------TAGCAGCATGTAAATATTGG 	8
---------------------------------------------------TAGCAGCATGTAAATATTGGAGTT 	1
---------------------------------------------------TAGCAGCATGTAAATATTGGA 	225
----------------------------------------------------AGCAGCATGTAAATATTGGAGT 	5
------------------------------------------------------CAGCATGTAAATATTGGAGT 	1
-------------------------------------------------------AGCATGTAAATATTGGAGTTA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540646	TAGCAGCATGTAAATATTGGAG	CCAATATTGCTCGTGCTGCTGAA	up	2	1

Secondary structure

GAGAACGACAAGTGAGAGAGGTTGTGTGTGTGTGCGTGTGTTGTCTTGCTTTAGCAGCATGTAAATATTGGAGTTACTCCTTGGCCAATGCCTCCAATATTGCTCGTGCTGCTGAAGCAAGAAGTCACCAAGCAGCACATGCACGTCATCCTTTTTTTATATTT
--------------------------------------------------TTAGCAGCATGTAAATATTGGA 	137
--------------------------------------------------TTAGCAGCATGTAAATATTGG 	20
--------------------------------------------------TTAGCAGCATGTAAATATTGGAG 	1
---------------------------------------------------TAGCAGCATGTAAATATTGGAGT 	682
---------------------------------------------------TAGCAGCATGTAAATATTGGAG 	3455
---------------------------------------------------TAGCAGCATGTAAATATTGG 	153
---------------------------------------------------TAGCAGCATGTAAATATTGGAGTT 	9
---------------------------------------------------TAGCAGCATGTAAATATTGGA 	1598
---------------------------------------------------TAGCAGCATGTAAATATTG 	4
----------------------------------------------------AGCAGCATGTAAATATTGGAGT 	14
----------------------------------------------------AGCAGCATGTAAATATTGGAG 	9
----------------------------------------------------AGCAGCATGTAAATATTGGA 	5
----------------------------------------------------AGCAGCATGTAAATATTGG 	2
-------------------------------------------------------AGCATGTAAATATTGGAGTTA 	1

HuntMi prediction: true miRNA