miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TAGCCAAGAATGACTTGCCTA

selected species: Oryza sativa

14 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM571078-22531	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

GATGAGAGAGAGAGAGAGATATCTGAAGAGTGAAGAGAAGAGGGGAGCCTTACATGGAGATTGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTTTCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCTAGGCCACCCCTCTTCAGAATTTTTCAGCTTATTTTGCATTCTCTCTGCAAATG
--------------------------------------------------------------------------------GTAGCCAAGAATGACTTGCCTA 	1
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	50
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	1
-----------------------------------------------------------------------------------GCCAAGAATGACTTGCCTA 	1

Overlaps with: MNEST041978 MNEST048890
Overlaps with miRBase pre-miRNAs: osa-MIR169o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM571078-22531	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

AATTGATAAGAGTAAAGAGTGAAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTATGTGTTTTGCCTTGTGTTGGCTCATCCATCCATCTATCAGCCGTTGCAGATTTGCAGTGGCAGATTAAAGGGTTTCAGAAAGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACTCCTCTTCTGAATTTTCAGCCTTTTTGCTCTCTCTC
----------------------------------------------------------------------GTAGCCAAGAATGACTTGCCTA 	1
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	50
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTATG 	1
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	1
-------------------------------------------------------------------------GCCAAGAATGACTTGCCTA 	1

Overlaps with: MNEST041977 MNEST048889
Overlaps with miRBase pre-miRNAs: osa-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM520638-18676	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

AATTGATAAGAGTAAAGAGTGAAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTATGTGTTTTGCCTTGTGTTGGCTCATCCATCCATCTATCAGCCGTTGCAGATTTGCAGTGGCAGATTAAAGGGTTTCAGAAAGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACTCCTCTTCTGAATTTTCAGCCTTTTTGCTCTCTCTC
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	2
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	151
------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	1

Overlaps with: MNEST041977 MNEST048889
Overlaps with miRBase pre-miRNAs: osa-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM520638-18676	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

GATGAGAGAGAGAGAGAGATATCTGAAGAGTGAAGAGAAGAGGGGAGCCTTACATGGAGATTGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTTTCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCTAGGCCACCCCTCTTCAGAATTTTTCAGCTTATTTTGCATTCTCTCTGCAAATG
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	2
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	151
----------------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	1

Overlaps with: MNEST041978 MNEST048890
Overlaps with miRBase pre-miRNAs: osa-MIR169o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Oryza sativa	GSM686040-31373	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

GATGAGAGAGAGAGAGAGATATCTGAAGAGTGAAGAGAAGAGGGGAGCCTTACATGGAGATTGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTTTCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCTAGGCCACCCCTCTTCAGAATTTTTCAGCTTATTTTGCATTCTCTCTGCAAATG
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	5

Overlaps with: MNEST041978 MNEST048890
Overlaps with miRBase pre-miRNAs: osa-MIR169o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Oryza sativa	GSM686040-31373	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

AATTGATAAGAGTAAAGAGTGAAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTATGTGTTTTGCCTTGTGTTGGCTCATCCATCCATCTATCAGCCGTTGCAGATTTGCAGTGGCAGATTAAAGGGTTTCAGAAAGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACTCCTCTTCTGAATTTTCAGCCTTTTTGCTCTCTCTC
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	5

Overlaps with: MNEST041977 MNEST048889
Overlaps with miRBase pre-miRNAs: osa-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Oryza sativa	GSM520640-18679	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

GATGAGAGAGAGAGAGAGATATCTGAAGAGTGAAGAGAAGAGGGGAGCCTTACATGGAGATTGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTTTCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCTAGGCCACCCCTCTTCAGAATTTTTCAGCTTATTTTGCATTCTCTCTGCAAATG
--------------------------------------------------------------------------------GTAGCCAAGAATGACTTGCCTA 	2
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	1
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	512
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCT 	9
----------------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	12
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGTCTTCTTGGCTAGCCA 	1

Overlaps with: MNEST041978 MNEST048890
Overlaps with miRBase pre-miRNAs: osa-MIR169o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Oryza sativa	GSM520640-18679	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

AATTGATAAGAGTAAAGAGTGAAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTATGTGTTTTGCCTTGTGTTGGCTCATCCATCCATCTATCAGCCGTTGCAGATTTGCAGTGGCAGATTAAAGGGTTTCAGAAAGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACTCCTCTTCTGAATTTTCAGCCTTTTTGCTCTCTCTC
----------------------------------------------------------------------GTAGCCAAGAATGACTTGCCTA 	2
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	1
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	512
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCT 	9
------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	2
--------------------------------------------------------------------------------------------TGTGTTTTGCCTTGTGTTGGC 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	12
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGTCTTCTTGGCTAGCCA 	1

Overlaps with: MNEST041977 MNEST048889
Overlaps with miRBase pre-miRNAs: osa-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Oryza sativa	GSM571077-22529	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

GATGAGAGAGAGAGAGAGATATCTGAAGAGTGAAGAGAAGAGGGGAGCCTTACATGGAGATTGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTTTCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCTAGGCCACCCCTCTTCAGAATTTTTCAGCTTATTTTGCATTCTCTCTGCAAATG
--------------------------------------------------------------------------------GTAGCCAAGAATGACTTGCCTA 	1
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	22
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCT 	1
----------------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	6
-----------------------------------------------------------------------------------GCCAAGAATGACTTGCCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	1

Overlaps with: MNEST041978 MNEST048890
Overlaps with miRBase pre-miRNAs: osa-MIR169o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Oryza sativa	GSM571077-22529	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

AATTGATAAGAGTAAAGAGTGAAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTATGTGTTTTGCCTTGTGTTGGCTCATCCATCCATCTATCAGCCGTTGCAGATTTGCAGTGGCAGATTAAAGGGTTTCAGAAAGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACTCCTCTTCTGAATTTTCAGCCTTTTTGCTCTCTCTC
----------------------------------------------------------------------GTAGCCAAGAATGACTTGCCTA 	1
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	22
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCT 	1
------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	6
-------------------------------------------------------------------------GCCAAGAATGACTTGCCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	1

Overlaps with: MNEST041977 MNEST048889
Overlaps with miRBase pre-miRNAs: osa-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Oryza sativa	GSM693279	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

AATTGATAAGAGTAAAGAGTGAAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTATGTGTTTTGCCTTGTGTTGGCTCATCCATCCATCTATCAGCCGTTGCAGATTTGCAGTGGCAGATTAAAGGGTTTCAGAAAGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACTCCTCTTCTGAATTTTCAGCCTTTTTGCTCTCTCTC
--------------------------------------------TGGAGATGGAGAGGCTACTCCCTTT 	1
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	24
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	1
------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	1
-------------------------------------------------------------------------GCCAAGAATGACTTGCCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAG 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	4

Overlaps with: MNEST041977 MNEST048889
Overlaps with miRBase pre-miRNAs: osa-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Oryza sativa	GSM693279	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

GATGAGAGAGAGAGAGAGATATCTGAAGAGTGAAGAGAAGAGGGGAGCCTTACATGGAGATTGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTTTCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCTAGGCCACCCCTCTTCAGAATTTTTCAGCTTATTTTGCATTCTCTCTGCAAATG
------------------------------------------------------TGGAGATTGAGAGGCTACT 	2
------------------------------------------------------TGGAGATTGAGAGGCTACTCCCT 	1
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	24
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	1
----------------------------------------------------------------------------------AGCCAAGAATGACTTGCCTA 	1
-----------------------------------------------------------------------------------GCCAAGAATGACTTGCCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAG 	5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGC 	4

Overlaps with: MNEST041978 MNEST048890
Overlaps with miRBase pre-miRNAs: osa-MIR169o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Oryza sativa	GSM520639-18678	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

GATGAGAGAGAGAGAGAGATATCTGAAGAGTGAAGAGAAGAGGGGAGCCTTACATGGAGATTGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTTTCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCTAGGCCACCCCTCTTCAGAATTTTTCAGCTTATTTTGCATTCTCTCTGCAAATG
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	2
---------------------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	148
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGCC 	2

Overlaps with: MNEST041978 MNEST048890
Overlaps with miRBase pre-miRNAs: osa-MIR169o
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Oryza sativa	GSM520639-18678	TAGCCAAGAATGACTTGCCTA	GGCCGGTCTTCTTGGCTAGC	up	1	1

Secondary structure

AATTGATAAGAGTAAAGAGTGAAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTACTCCCTTTGGTAGCCAAGAATGACTTGCCTATGTGTTTTGCCTTGTGTTGGCTCATCCATCCATCTATCAGCCGTTGCAGATTTGCAGTGGCAGATTAAAGGGTTTCAGAAAGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACTCCTCTTCTGAATTTTCAGCCTTTTTGCTCTCTCTC
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCC 	2
-----------------------------------------------------------------------TAGCCAAGAATGACTTGCCTA 	148
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGGTCTTCTTGGCTAGCC 	2

Overlaps with: MNEST041977 MNEST048889
Overlaps with miRBase pre-miRNAs: osa-MIR169n
HuntMi prediction: true miRNA