miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCCAAGGATGACTTGCCGG

selected species: Brachypodium distachyon



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TAGCCAAGGATGACTTGCCGG GGCAGGTTGTTCTTGGCTAACA up 0 1


Secondary structure

CTGTCAATGGCCATACGTGAAACGAGATAGAGAGTGGAATGTAGCCAAGGATGACTTGCCGGGTATGTGCATGTACGCTTCAGGGAATTATATGCATCCCTGGTCTGAATCCATGCTGATATTTCCCGGCAGGTTGTTCTTGGCTAACATCTTGCTCTCTTTCTCTCACGCGAGGCTGTTGCATGGA
------------------------------AGAGTGGAATGTAGCCAAGGA 	1
--------------------------------------ATGTAGCCAAGGATGACTTGC 	2
----------------------------------------GTAGCCAAGGATGACTTGCCG 	1
----------------------------------------GTAGCCAAGGATGACTTGCC 	1
-----------------------------------------TAGCCAAGGATGACTTGCCGGG 	1
-----------------------------------------TAGCCAAGGATGACTTGCCGG 	374
-----------------------------------------TAGCCAAGGATGACTTGCCG 	16
-----------------------------------------TAGCCAAGGATGACTTGCC 	2
------------------------------------------AGCCAAGGATGACTTGCCGGG 	2
------------------------------------------AGCCAAGGATGACTTGCCGG 	21
-------------------------------------------GCCAAGGATGACTTGCCGG 	1
---------------------------------------------CAAGGATGACTTGCCGGGTAT 	2
---------------------------------------------CAAGGATGACTTGCCGGGTA 	3
-----------------------------------------------AGGATGACTTGCCGGGTAT 	1
-------------------------------------------------------------------------------------------------------------------------TTTCCCGGCAGGTTGTTCTTG 	1
--------------------------------------------------------------------------------------------------------------------------TTCCCGGCAGGTTGTTCTTGG 	2
------------------------------------------------------------------------------------------------------------------------------CGGCAGGTTGTTCTTGGCTA 	4
-------------------------------------------------------------------------------------------------------------------------------GGCAGGTTGTTCTTGGCTA 	1
--------------------------------------------------------------------------------------------------------------------------------GCAGGTTGTTCTTGGCTAACA 	31
--------------------------------------------------------------------------------------------------------------------------------GCAGGTTGTTCTTGGCTAAC 	12
--------------------------------------------------------------------------------------------------------------------------------GCAGGTTGTTCTTGGCTAA 	27
---------------------------------------------------------------------------------------------------------------------------------CAGGTTGTTCTTGGCTAACA 	4
---------------------------------------------------------------------------------------------------------------------------------CAGGTTGTTCTTGGCTAAC 	1
----------------------------------------------------------------------------------------------------------------------------------AGGTTGTTCTTGGCTAACA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCTCTCTTTCTCTCACG 	1

Overlaps with: MNEST041754 MNEST048310
Overlaps with miRBase pre-miRNAs: bdi-MIR169b
HuntMi prediction: true miRNA