miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCCAAGGATGACTTGCCTA

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TAGCCAAGGATGACTTGCCTA GGCAGTCACCTTGGCTAGC up 0 2


Secondary structure

CACCGATCATCAGTAGGAAGAAGAGGGGCCTTGCATGAGGGCCAGAGCCTGCTTCCTCCGGTAGCCAAGGATGACTTGCCTATATTTGCTCCTTCAGAAGTCCTGGTTAATTACATGCCAGGTTTCAGATGAGTTTGGCGATAGGCAGTCACCTTGGCTAGCCTGAGTGGCTCTTGCCTCTTATGGAAGGCCTCTCCTTCTCATTCTCTGCCATGCTGTC
------------------------------------------------------------GTAGCCAAGGATGACTTGCC 	1
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTAT 	1
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTA 	49
-------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	5
-------------------------------------------------------------TAGCCAAGGATGACTTGCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------TAGGCAGTCACCTTGGCTAG 	1
---------------------------------------------------------------------------------------------------------------------------------------------TAGGCAGTCACCTTGGCTA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCACCTTGGCTAGC 	6

Overlaps with: MNEST041760
Overlaps with miRBase pre-miRNAs: bdi-MIR169h
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TAGCCAAGGATGACTTGCCTA GGCATGTCTTCCTTGGCTATT up 2 0


Secondary structure

GTTAGAAGAGGGGCCTTGCATGAGGACTAGAGCTGATTCGGTAGCCAAGGATGACTTGCCTAAATGTGTCTATGTAATTCATCTGAGTTGGCATGGGACCGTTAATTTTAGGCATGTCTTCCTTGGCTATTCGGAGTGCCTCTTTGCTGCTCATGCAATGCTTAATTTG
----------------------------------------GTAGCCAAGGATGACTTGCC 	1
-----------------------------------------TAGCCAAGGATGACTTGCCTA 	49
-----------------------------------------TAGCCAAGGATGACTTGCCT 	5
-----------------------------------------TAGCCAAGGATGACTTGCC 	2


HuntMi prediction: true miRNA