miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TAGCCAAGGATGACTTGCCTA

selected species: Oryza sativa

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM571078-22531	TAGCCAAGGATGACTTGCCTA	GGCAGTCTCCTTGGCTAGC	up	0	2

Secondary structure

TCGGTAGGAAGGAAGCTAGGAAGAAAGAGGAAGAAGAGGGGCCTTGCATGAGGGCTAGAGCCTGCCTCTGGTAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCTCTTGTCTGTCATGGAAGGCTTCTGCTTCTCATTGATTCAGTGCTGTTCTCAAGTGATC
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCTA 	47
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	6
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCC 	4
------------------------------------------------------------------------AGCCAAGGATGACTTGCCTA 	5
-------------------------------------------------------------------------GCCAAGGATGACTTGCCTA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGCAGTCTCCTTGGCTAG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTAGC 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	37
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGCC 	1

Overlaps with: MNEST044871 MNEST045098 MNEST045185 MNEST045637 MNEST045721 MNEST045807 MNEST046188
Overlaps with miRBase pre-miRNAs: osa-MIR169g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM520638-18676	TAGCCAAGGATGACTTGCCTA	GGCAGTCTCCTTGGCTAGC	up	0	2

Secondary structure

TCGGTAGGAAGGAAGCTAGGAAGAAAGAGGAAGAAGAGGGGCCTTGCATGAGGGCTAGAGCCTGCCTCTGGTAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCTCTTGTCTGTCATGGAAGGCTTCTGCTTCTCATTGATTCAGTGCTGTTCTCAAGTGATC
------------------------------------------------TGAGGGCTAGAGCCTGCCTCTGG 	3
----------------------------------------------------------------------GTAGCCAAGGATGACTTGC 	2
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCTA 	307
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCC 	8
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCTATT 	1
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	75
------------------------------------------------------------------------AGCCAAGGATGACTTGCCT 	3
------------------------------------------------------------------------AGCCAAGGATGACTTGCCTA 	1
--------------------------------------------------------------------------------------------TTGTGCTCTTCTGAATGATGCA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGCC 	4
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTGGCTCTTGTCTGTCATG 	1

Overlaps with: MNEST044871 MNEST045098 MNEST045185 MNEST045637 MNEST045721 MNEST045807 MNEST046188
Overlaps with miRBase pre-miRNAs: osa-MIR169g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM520640-18679	TAGCCAAGGATGACTTGCCTA	GGCAGTCTCCTTGGCTAGC	up	0	2

Secondary structure

TCGGTAGGAAGGAAGCTAGGAAGAAAGAGGAAGAAGAGGGGCCTTGCATGAGGGCTAGAGCCTGCCTCTGGTAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCTCTTGTCTGTCATGGAAGGCTTCTGCTTCTCATTGATTCAGTGCTGTTCTCAAGTGATC
------------------------------------------------TGAGGGCTAGAGCCTGCCTCTGG 	4
---------------------------------------------------------------------GGTAGCCAAGGATGACTTGCCT 	2
----------------------------------------------------------------------GTAGCCAAGGATGACTTGC 	2
----------------------------------------------------------------------GTAGCCAAGGATGACTTGCCTA 	1
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCTA 	944
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCTAT 	2
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCC 	14
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	87
------------------------------------------------------------------------AGCCAAGGATGACTTGCCTA 	2
-------------------------------------------------------------------------GCCAAGGATGACTTGCCTA 	1
-----------------------------------------------------------------------------------------------TGCTCTTCTGAATGATGCAGTGCCA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTAGC 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTAGCC 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	41
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGCC 	17
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTAGCCTGA 	1

Overlaps with: MNEST044871 MNEST045098 MNEST045185 MNEST045637 MNEST045721 MNEST045807 MNEST046188
Overlaps with miRBase pre-miRNAs: osa-MIR169g
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM520639-18678	TAGCCAAGGATGACTTGCCTA	GGCAGTCTCCTTGGCTAGC	up	0	2

Secondary structure

TCGGTAGGAAGGAAGCTAGGAAGAAAGAGGAAGAAGAGGGGCCTTGCATGAGGGCTAGAGCCTGCCTCTGGTAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCTCTTGTCTGTCATGGAAGGCTTCTGCTTCTCATTGATTCAGTGCTGTTCTCAAGTGATC
------------------------------------------------TGAGGGCTAGAGCCTGCCT 	2
------------------------------------------------TGAGGGCTAGAGCCTGCCTCTG 	3
------------------------------------------------TGAGGGCTAGAGCCTGCCTCTGG 	10
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCTA 	496
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCTAT 	2
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	71
-----------------------------------------------------------------------TAGCCAAGGATGACTTGCC 	3
------------------------------------------------------------------------AGCCAAGGATGACTTGCCTA 	2
-------------------------------------------------------------------------GCCAAGGATGACTTGCCTA 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	9
-----------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTAGCCTGA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTGGCTCTTGTCTGTCATG 	2

Overlaps with: MNEST044871 MNEST045098 MNEST045185 MNEST045637 MNEST045721 MNEST045807 MNEST046188
Overlaps with miRBase pre-miRNAs: osa-MIR169g
HuntMi prediction: true miRNA