miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TAGCCAAGGATGACTTGCCTG

selected species: Arabidopsis thaliana

28 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM415786-5994	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATT	up	0	2

Secondary structure

CATAAATCATATAAGAGAAAATGGTGACATGAAGAATGAGAACTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTTTTAGACCATATATATCAAAGACTCACTCGATCGATAGTCTTAGAGTTGGTTGGTCGTCAGGCAGTCTCCTTGGCTATTCAAACAATTCTCATTCTCTTCATTCACATTTCTCTTTTTTGGGAAACT
--------------------------------AGAATGAGAACTTGTGTGG 	1
-------------------------------------------------GGTAGCCAAGGATGACTTGCC 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	31
---------------------------------------------------TAGCCAAGGATGACTTGCC 	1
----------------------------------------------------AGCCAAGGATGACTTGCCTG 	1
------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCTA 	5
------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCT 	1
-------------------------------------------------------------------------------------------------------------------------------------CAGGCAGTCTCCTTGGCTAT 	3
-------------------------------------------------------------------------------------------------------------------------------------CAGGCAGTCTCCTTGGCTA 	1
--------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTATTC 	1
--------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTATT 	4
--------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTAT 	2
---------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATTC 	3
---------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATT 	7

Overlaps with: MNEST047103
Overlaps with miRBase pre-miRNAs: ath-MIR169h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM415785	TAGCCAAGGATGACTTGCCTGT	AGGCAGTCTCCTTGGCTATC	up	1	2

Secondary structure

ATACATTATTTAGAAGGAGAAGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGTTTCTTTGAGTAAAATGGGTTAGTGTCATGTTTGACAAGTGACTATAAGTTATATCAAGCAATGACCATTTTACTCATCAAAAGACATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTCTCATCTCAGACGTTTACCTTCATTCAAAAT
---------------------------------------------------TAGCCAAGGATGACTTGCCTGT 	15
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	1

Overlaps with: MNEST040057 MNEST046973
Overlaps with miRBase pre-miRNAs: ath-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM366870	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

AGAGTAATAAAGAGTATAATGAGGAAGAGAGGTCTAACATGGCGAAAAGAGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTGTAATTCATGGGTTTTGGATTATTATACATTCAAAAGTATAATAATTTGAAATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCCTTGGCTATCTTGACATGCTTTTTTCATTCACGTTATACCTGTTTTTCTTTCTGTCTCCATAGTCACT
---------------------------------------TGGCGAAAAGAGTCATGTTTAG 	1
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	51
-------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	3
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTG 	5
--------------------------------------------------------------------------------------------------------------------ATGGGTTTTGGATTATTATAC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCT 	1

Overlaps with: MNEST040054 MNEST046970
Overlaps with miRBase pre-miRNAs: ath-MIR169j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM366870	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

TAAATATAATGAAGAAGAGAGGTCTAATATGGCGAAAAGAGTCATGTTTAATAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTTAAGTTCGTGGATTTTGGATTATTATGCGTTTAAAAGGTATAATAATTTGAGATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTCTTCATCCATGTTATACTTATTTTTCTGTCTTCCGA
-----------------------------TGGCGAAAAGAGTCATGTTTAA 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	51
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	3
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCTTTGGCTATCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATC 	1

Overlaps with: MNEST040056 MNEST046972
Overlaps with miRBase pre-miRNAs: ath-MIR169l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM366870	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

ACACATTATTTAGAAGGAGATGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGACTCTTTGTGTAAAATGTTTAGTGTCTTGTTTGAAGTCACTATAAGTTGTATCAAGCAATGACCATTTTGCTTATAAAAAAGATATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTTTCATCTCAGACATTCACCTTCATACAAAAT
----------------------------------------ATCATATTTGGTAGCCAAGGA 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	51
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	3
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATGTTCTTCTCTTTCA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATGTTCTTCTCTTTCATC 	1

Overlaps with: MNEST040053 MNEST046969
Overlaps with miRBase pre-miRNAs: ath-MIR169i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM366870	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

AGTGTATGATGAAGAAGAGAGGTCTAACATGGCGGAAAGCGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCGCCTCCACGATTCAATTTCAAATTCATGCATTTTGGATTATTATACCTTTTAAAGTATAATAGGTCAAATATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTTTCCATCCATGTTATACCTACTTTTCTTTCTGTCTT
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	51
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	3
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCTTTGGCTATCT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATC 	1

Overlaps with: MNEST040058 MNEST046974
Overlaps with miRBase pre-miRNAs: ath-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM366870	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

ATACATTATTTAGAAGGAGAAGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGTTTCTTTGAGTAAAATGGGTTAGTGTCATGTTTGACAAGTGACTATAAGTTATATCAAGCAATGACCATTTTACTCATCAAAAGACATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTCTCATCTCAGACGTTTACCTTCATTCAAAAT
----------------------------------------ATCATATTTGGTAGCCAAGGA 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	3
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	5

Overlaps with: MNEST040057 MNEST046973
Overlaps with miRBase pre-miRNAs: ath-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM366870	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

TAGAAGGAGATGTCAAAGATGAATAGGAGAACAATATTTGGTAGCCAAGGATGACTTGCCTGCTTCTCTGAACAAAATGGTCGATGTCATGTTTTGAAGTGACTATAAGTTATACCAAGAAATGACCATTTTGTTTATAAATAGACATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCTCAACTCAGATATTTACCTT
-----------------------------------------TAGCCAAGGATGACTTGCCT 	3
-----------------------------------------TAGCCAAGGATGACTTGCCTG 	5
-----------------------------------------TAGCCAAGGATGACTTGCCTGC 	2

Overlaps with: MNEST040055 MNEST046971
Overlaps with miRBase pre-miRNAs: ath-MIR169k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM366870	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATT	up	0	2

Secondary structure

CATAAATCATATAAGAGAAAATGGTGACATGAAGAATGAGAACTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTTTTAGACCATATATATCAAAGACTCACTCGATCGATAGTCTTAGAGTTGGTTGGTCGTCAGGCAGTCTCCTTGGCTATTCAAACAATTCTCATTCTCTTCATTCACATTTCTCTTTTTTGGGAAACT
-------------------------------------GAGAACTTGTGTGGTAGCCA 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	3
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	5
---------------------------------------------------TAGCCAAGGATGACTTGCCTGC 	2

Overlaps with: MNEST047103
Overlaps with miRBase pre-miRNAs: ath-MIR169h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM366869	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

AGAGTAATAAAGAGTATAATGAGGAAGAGAGGTCTAACATGGCGAAAAGAGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTGTAATTCATGGGTTTTGGATTATTATACATTCAAAAGTATAATAATTTGAAATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCCTTGGCTATCTTGACATGCTTTTTTCATTCACGTTATACCTGTTTTTCTTTCTGTCTCCATAGTCACT
---------------------------------------TGGCGAAAAGAGTCATGTTTA 	1
-------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	14
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTG 	2
---------------------------------------------------------------GCCAAGGATGACTTGCCTGA 	1
----------------------------------------------------------------CCAAGGATGACTTGCCTGATCTT 	1

Overlaps with: MNEST040054 MNEST046970
Overlaps with miRBase pre-miRNAs: ath-MIR169j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM366869	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

TAAATATAATGAAGAAGAGAGGTCTAATATGGCGAAAAGAGTCATGTTTAATAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTTAAGTTCGTGGATTTTGGATTATTATGCGTTTAAAAGGTATAATAATTTGAGATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTCTTCATCCATGTTATACTTATTTTTCTGTCTTCCGA
-----------------------------TGGCGAAAAGAGTCATGTTTA 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	14
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	2
-----------------------------------------------------GCCAAGGATGACTTGCCTGA 	1
------------------------------------------------------CCAAGGATGACTTGCCTGATCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	1

Overlaps with: MNEST040056 MNEST046972
Overlaps with miRBase pre-miRNAs: ath-MIR169l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM366869	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

ACACATTATTTAGAAGGAGATGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGACTCTTTGTGTAAAATGTTTAGTGTCTTGTTTGAAGTCACTATAAGTTGTATCAAGCAATGACCATTTTGCTTATAAAAAAGATATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTTTCATCTCAGACATTCACCTTCATACAAAAT
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	14
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	2
-----------------------------------------------------GCCAAGGATGACTTGCCTGA 	1

Overlaps with: MNEST040053 MNEST046969
Overlaps with miRBase pre-miRNAs: ath-MIR169i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Arabidopsis thaliana	GSM366869	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

AGTGTATGATGAAGAAGAGAGGTCTAACATGGCGGAAAGCGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCGCCTCCACGATTCAATTTCAAATTCATGCATTTTGGATTATTATACCTTTTAAAGTATAATAGGTCAAATATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTTTCCATCCATGTTATACCTACTTTTCTTTCTGTCTT
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	14
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	2
-----------------------------------------------------GCCAAGGATGACTTGCCTGA 	1
------------------------------------------------------CCAAGGATGACTTGCCTGATCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	1

Overlaps with: MNEST040058 MNEST046974
Overlaps with miRBase pre-miRNAs: ath-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Arabidopsis thaliana	GSM366866	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

TAAATATAATGAAGAAGAGAGGTCTAATATGGCGAAAAGAGTCATGTTTAATAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTTAAGTTCGTGGATTTTGGATTATTATGCGTTTAAAAGGTATAATAATTTGAGATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTCTTCATCCATGTTATACTTATTTTTCTGTCTTCCGA
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	6
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	484
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	63
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCTTTGGCTA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCTTTGGCTATC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	17
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATC 	3

Overlaps with: MNEST040056 MNEST046972
Overlaps with miRBase pre-miRNAs: ath-MIR169l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Arabidopsis thaliana	GSM366866	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

ACACATTATTTAGAAGGAGATGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGACTCTTTGTGTAAAATGTTTAGTGTCTTGTTTGAAGTCACTATAAGTTGTATCAAGCAATGACCATTTTGCTTATAAAAAAGATATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTTTCATCTCAGACATTCACCTTCATACAAAAT
-----------------------------TGAATAGAAGAATCATATTTGG 	2
-------------------------------------------------GGTAGCCAAGGATGACTTGCCTGA 	1
-------------------------------------------------GGTAGCCAAGGATGACTTGCCT 	4
---------------------------------------------------TAGCCAAGGATGACTTGCCTGACT 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	6
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	484
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	63
---------------------------------------------------TAGCCAAGGATGACTTGCCTGAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCTA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCTT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCTT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCT 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCTATCCTTATATGTTC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATGTTCTTCTCTTTC 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATGTTCTTCTCTTTCATC 	34
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATGTTCTTCTCTTTCATCT 	6
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTTCTTCTCTTTCATCT 	1

Overlaps with: MNEST040053 MNEST046969
Overlaps with miRBase pre-miRNAs: ath-MIR169i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Arabidopsis thaliana	GSM366866	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

AGTGTATGATGAAGAAGAGAGGTCTAACATGGCGGAAAGCGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCGCCTCCACGATTCAATTTCAAATTCATGCATTTTGGATTATTATACCTTTTAAAGTATAATAGGTCAAATATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTTTCCATCCATGTTATACCTACTTTTCTTTCTGTCTT
------------------------------------------------TAGTAGCCAAGGATGACTTGCCT 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	6
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	484
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	63
------------------------------------------------------------ATGACTTGCCTGATCTTTTTCGCCTC 	3
------------------------------------------------------------ATGACTTGCCTGATCTTTTTCGCCT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCTTTGGCTA 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGTCTCTTTGGCTATC 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	17
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATC 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCTATCTTGACATGCTTTT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATCTTGACATGCTTTTTCCA 	1

Overlaps with: MNEST040058 MNEST046974
Overlaps with miRBase pre-miRNAs: ath-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Arabidopsis thaliana	GSM366866	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

AGAGTAATAAAGAGTATAATGAGGAAGAGAGGTCTAACATGGCGAAAAGAGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTGTAATTCATGGGTTTTGGATTATTATACATTCAAAAGTATAATAATTTGAAATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCCTTGGCTATCTTGACATGCTTTTTTCATTCACGTTATACCTGTTTTTCTTTCTGTCTCCATAGTCACT
----------------------------------------------------------TAGTAGCCAAGGATGACTTGCCT 	2
-------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	6
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	484
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTG 	63
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCTA 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCT 	12
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCT 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCTATCTTGACATGCTTTT 	1

Overlaps with: MNEST040054 MNEST046970
Overlaps with miRBase pre-miRNAs: ath-MIR169j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Arabidopsis thaliana	GSM366866	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

TAGAAGGAGATGTCAAAGATGAATAGGAGAACAATATTTGGTAGCCAAGGATGACTTGCCTGCTTCTCTGAACAAAATGGTCGATGTCATGTTTTGAAGTGACTATAAGTTATACCAAGAAATGACCATTTTGTTTATAAATAGACATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCTCAACTCAGATATTTACCTT
---------------------------------------GGTAGCCAAGGATGACTTGCCT 	4
-----------------------------------------TAGCCAAGGATGACTTGCCTGC 	4
-----------------------------------------TAGCCAAGGATGACTTGCCT 	6
-----------------------------------------TAGCCAAGGATGACTTGCCTG 	63
---------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCTA 	3
------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCTT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCTATCCTTATATGTTC 	1

Overlaps with: MNEST040055 MNEST046971
Overlaps with miRBase pre-miRNAs: ath-MIR169k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Arabidopsis thaliana	GSM366866	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

ATACATTATTTAGAAGGAGAAGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGTTTCTTTGAGTAAAATGGGTTAGTGTCATGTTTGACAAGTGACTATAAGTTATATCAAGCAATGACCATTTTACTCATCAAAAGACATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTCTCATCTCAGACGTTTACCTTCATTCAAAAT
-----------------------------TGAATAGAAGAATCATATTTGG 	2
-------------------------------------------------GGTAGCCAAGGATGACTTGCCT 	4
---------------------------------------------------TAGCCAAGGATGACTTGCCTGT 	5
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	6
---------------------------------------------------TAGCCAAGGATGACTTGCCTGTTT 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	63
---------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCTA 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCC 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCTT 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCTT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCT 	2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCTATCCTTATATGTTC 	1

Overlaps with: MNEST040057 MNEST046973
Overlaps with miRBase pre-miRNAs: ath-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Arabidopsis thaliana	GSM366866	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATT	up	0	2

Secondary structure

CATAAATCATATAAGAGAAAATGGTGACATGAAGAATGAGAACTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTTTTAGACCATATATATCAAAGACTCACTCGATCGATAGTCTTAGAGTTGGTTGGTCGTCAGGCAGTCTCCTTGGCTATTCAAACAATTCTCATTCTCTTCATTCACATTTCTCTTTTTTGGGAAACT
----------------------------------AATGAGAACTTGTGTGGTAGC 	1
-------------------------------------------------GGTAGCCAAGGATGACTTGCCT 	4
---------------------------------------------------TAGCCAAGGATGACTTGCCTGC 	4
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	6
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	63
------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCTA 	3
---------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATTCA 	1

Overlaps with: MNEST047103
Overlaps with miRBase pre-miRNAs: ath-MIR169h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
21	Arabidopsis thaliana	GSM424848-4990	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATT	up	0	2

Secondary structure

CATAAATCATATAAGAGAAAATGGTGACATGAAGAATGAGAACTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTTTTAGACCATATATATCAAAGACTCACTCGATCGATAGTCTTAGAGTTGGTTGGTCGTCAGGCAGTCTCCTTGGCTATTCAAACAATTCTCATTCTCTTCATTCACATTTCTCTTTTTTGGGAAACT
--------------------------------------------------GTAGCCAAGGATGACTTGCCT 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	6
------------------------------------------------------------------------------------------------------------------------------------TCAGGCAGTCTCCTTGGCTAT 	1
-------------------------------------------------------------------------------------------------------------------------------------CAGGCAGTCTCCTTGGCTAT 	3
---------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATT 	1

Overlaps with: MNEST047103
Overlaps with miRBase pre-miRNAs: ath-MIR169h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
22	Arabidopsis thaliana	GSM518432-13544	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

ATACATTATTTAGAAGGAGAAGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGTTTCTTTGAGTAAAATGGGTTAGTGTCATGTTTGACAAGTGACTATAAGTTATATCAAGCAATGACCATTTTACTCATCAAAAGACATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTCTCATCTCAGACGTTTACCTTCATTCAAAAT
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	16
---------------------------------------------------TAGCCAAGGATGACTTGCCTGT 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCT 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCT 	1

Overlaps with: MNEST040057 MNEST046973
Overlaps with miRBase pre-miRNAs: ath-MIR169m
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
23	Arabidopsis thaliana	GSM518432-13544	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

TAGAAGGAGATGTCAAAGATGAATAGGAGAACAATATTTGGTAGCCAAGGATGACTTGCCTGCTTCTCTGAACAAAATGGTCGATGTCATGTTTTGAAGTGACTATAAGTTATACCAAGAAATGACCATTTTGTTTATAAATAGACATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTTTCTCAACTCAGATATTTACCTT
-----------------------------------------TAGCCAAGGATGACTTGCCTG 	16
-----------------------------------------TAGCCAAGGATGACTTGCCTGC 	5
-----------------------------------------TAGCCAAGGATGACTTGCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCCT 	2
------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCT 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCT 	1

Overlaps with: MNEST040055 MNEST046971
Overlaps with miRBase pre-miRNAs: ath-MIR169k
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
24	Arabidopsis thaliana	GSM518432-13544	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

AGTGTATGATGAAGAAGAGAGGTCTAACATGGCGGAAAGCGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCGCCTCCACGATTCAATTTCAAATTCATGCATTTTGGATTATTATACCTTTTAAAGTATAATAGGTCAAATATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTTTCCATCCATGTTATACCTACTTTTCTTTCTGTCTT
-----------------------------TGGCGGAAAGCGTCATGTTTAG 	1
--------------------------------------------------GTAGCCAAGGATGACTTGCCTGA 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	16
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	121
-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTGCGGGTTAGGTTTCA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	9

Overlaps with: MNEST040058 MNEST046974
Overlaps with miRBase pre-miRNAs: ath-MIR169n
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
25	Arabidopsis thaliana	GSM518432-13544	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

AGAGTAATAAAGAGTATAATGAGGAAGAGAGGTCTAACATGGCGAAAAGAGTCATGTTTAGTAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTGTAATTCATGGGTTTTGGATTATTATACATTCAAAAGTATAATAATTTGAAATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCCTTGGCTATCTTGACATGCTTTTTTCATTCACGTTATACCTGTTTTTCTTTCTGTCTCCATAGTCACT
------------------------------------------------------------GTAGCCAAGGATGACTTGCCTGA 	1
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTG 	16
-------------------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	121
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTGCGGGTTAGGTTTCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCT 	1

Overlaps with: MNEST040054 MNEST046970
Overlaps with miRBase pre-miRNAs: ath-MIR169j
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
26	Arabidopsis thaliana	GSM518432-13544	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCTTTGGCTATC	up	0	2

Secondary structure

TAAATATAATGAAGAAGAGAGGTCTAATATGGCGAAAAGAGTCATGTTTAATAGCCAAGGATGACTTGCCTGATCTTTTTCACCTCCATGATTCAATTTTAAGTTCGTGGATTTTGGATTATTATGCGTTTAAAAGGTATAATAATTTGAGATCATGTTGAATCTTGCGGGTTAGGTTTCAGGCAGTCTCTTTGGCTATCTTGACATGCTTTCTTCATCCATGTTATACTTATTTTTCTGTCTTCCGA
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	16
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	121
-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTGCGGGTTAGGTTTCA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCTTTGGCTATCT 	9

Overlaps with: MNEST040056 MNEST046972
Overlaps with miRBase pre-miRNAs: ath-MIR169l
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
27	Arabidopsis thaliana	GSM518432-13544	TAGCCAAGGATGACTTGCCTGA	AGGCAGTCTCCTTGGCTATC	up	0	2

Secondary structure

ACACATTATTTAGAAGGAGATGTCAAAGATGAATAGAAGAATCATATTTGGTAGCCAAGGATGACTTGCCTGACTCTTTGTGTAAAATGTTTAGTGTCTTGTTTGAAGTCACTATAAGTTGTATCAAGCAATGACCATTTTGCTTATAAAAAAGATATCAGGCAGTCTCCTTGGCTATCCTTATATGTTCTTCTCTTTCATCTCAGACATTCACCTTCATACAAAAT
--------------------------------------------------GTAGCCAAGGATGACTTGCCTGA 	1
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	16
---------------------------------------------------TAGCCAAGGATGACTTGCCTGAC 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTGA 	121
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCCT 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATCC 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTATC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCTCCTTGGCTATCCT 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTCTCCTTGGCTATCCT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATGTTCTTCTCTTTCATC 	11

Overlaps with: MNEST040053 MNEST046969
Overlaps with miRBase pre-miRNAs: ath-MIR169i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
28	Arabidopsis thaliana	GSM518432-13544	TAGCCAAGGATGACTTGCCTG	GGCAGTCTCCTTGGCTATT	up	0	2

Secondary structure

CATAAATCATATAAGAGAAAATGGTGACATGAAGAATGAGAACTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTTTTAGACCATATATATCAAAGACTCACTCGATCGATAGTCTTAGAGTTGGTTGGTCGTCAGGCAGTCTCCTTGGCTATTCAAACAATTCTCATTCTCTTCATTCACATTTCTCTTTTTTGGGAAACT
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	16
---------------------------------------------------TAGCCAAGGATGACTTGCCTGC 	5
---------------------------------------------------TAGCCAAGGATGACTTGCCT 	2

Overlaps with: MNEST047103
Overlaps with miRBase pre-miRNAs: ath-MIR169h
HuntMi prediction: true miRNA