miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCCAAGGATGACTTGCCTG

selected species: Brachypodium distachyon



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTAGC up 0 2


Secondary structure

CTTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCATACTTCAAGGCTTGGCAACATGATGCATGAGCCTTTGTTGTAGTCTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGG
-----------TAGCCAAGGATGACTTGCCTGT 	1
-----------TAGCCAAGGATGACTTGCCTG 	8
-----------TAGCCAAGGATGACTTGCCT 	5
-----------TAGCCAAGGATGACTTGCC 	2
---------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	3


Overlaps with: MNEST041759
Overlaps with miRBase pre-miRNAs: bdi-MIR169g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506620-12051 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTAGC up 0 2


Secondary structure

TTTGGCCCTGATAGCCAAGGATGACTTGCCTGTGCATGTCCTCCCTTGATCGCTTGCATAATTTCATATATGCATGTGATCTCGATTTATCACAGGCAGTCTCCTTGGCTAGCCTGGGTGC
-----------TAGCCAAGGATGACTTGCCTGT 	1
-----------TAGCCAAGGATGACTTGCCTG 	8
-----------TAGCCAAGGATGACTTGCCT 	5
-----------TAGCCAAGGATGACTTGCC 	2
---------------CAAGGATGACTTGCCTGTGCA 	2
----------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	3


Overlaps with: MNEST041757
Overlaps with miRBase pre-miRNAs: bdi-MIR169e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Brachypodium distachyon GSM506621-23192 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTAGC up 0 2


Secondary structure

CTTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCATACTTCAAGGCTTGGCAACATGATGCATGAGCCTTTGTTGTAGTCTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGG
---ATCTCTGATAGCCAAGGATGACTT 	1
-----------TAGCCAAGGATGACTTGCCT 	3
-----------TAGCCAAGGATGACTTGCCTG 	59
-----------TAGCCAAGGATGACTTGCCTGT 	1
-----------TAGCCAAGGATGACTTGCC 	38
------------AGCCAAGGATGACTTGCCTG 	3
--------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTAGC 	2
---------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGCCT 	1
---------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	11


Overlaps with: MNEST041759
Overlaps with miRBase pre-miRNAs: bdi-MIR169g
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Brachypodium distachyon GSM506621-23192 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTAGC up 0 2


Secondary structure

TTTGGCCCTGATAGCCAAGGATGACTTGCCTGTGCATGTCCTCCCTTGATCGCTTGCATAATTTCATATATGCATGTGATCTCGATTTATCACAGGCAGTCTCCTTGGCTAGCCTGGGTGC
-----------TAGCCAAGGATGACTTGCCT 	3
-----------TAGCCAAGGATGACTTGCCTG 	59
-----------TAGCCAAGGATGACTTGCCTGT 	1
-----------TAGCCAAGGATGACTTGCC 	38
------------AGCCAAGGATGACTTGCCTG 	3
---------------------------------------------------------------------------------------------AGGCAGTCTCCTTGGCTAGC 	2
----------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGCCT 	1
----------------------------------------------------------------------------------------------GGCAGTCTCCTTGGCTAGC 	11


Overlaps with: MNEST041757
Overlaps with miRBase pre-miRNAs: bdi-MIR169e
HuntMi prediction: true miRNA