miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGCCAAGGATGACTTGCCTG

selected species: Solanum lycopersicum



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Solanum lycopersicum GSM304985 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTACT up 0 2


Secondary structure

GAAATGATAAAAGAAGAGTGTGTCTTACATGAAGGGAAGTGCCTAATTTGATAGCCAAGGATGACTTGCCTGCATCATTAGTTCTTGAGGCTAGCTTGTGATATATATCATGTATATGACATGTATACAAGCATTCTTCTTTGATGGCCAGGCAGTCTCCTTGGCTACTCTAATAGGTTCCTCTCATTCATGCTAGACTCTTCTCTTCTTATTTAGA
--------------------------------------------------ATAGCCAAGGATGACTTGCCTG 	2
--------------------------------------------------ATAGCCAAGGATGACTTGCC 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	82
---------------------------------------------------TAGCCAAGGATGACTTGCC 	5
-----------------------------------------------------GCCAAGGATGACTTGCCTG 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Solanum lycopersicum GSM304985 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTTGGCTACT up 2 1


Secondary structure

AAGAAATGGTAAAAGAAGAGTGTCTTACATGAAGGGTAAGTGCCTATTTGATAGCCAAGGATGACTTGCCTGCATCATTAATTAATTCTTGAGGCTAGCTTGTGATATATATCATGTATATGACATGTATACAAGCATTCTTCTTTGATGGCCAGGCAGTCTCCTTTGGCTACTCGAATAGGTTCCTCTCATTCATGCTAGACTCTTCTCTTCTTATTTAGC
--------------------------------------------------ATAGCCAAGGATGACTTGCCTG 	2
--------------------------------------------------ATAGCCAAGGATGACTTGCC 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	82
---------------------------------------------------TAGCCAAGGATGACTTGCC 	5
-----------------------------------------------------GCCAAGGATGACTTGCCTG 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Solanum lycopersicum GSM304985 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTACC up 0 2


Secondary structure

ATATATATATGAAAAAAGAAGAGATGTCTTACATGAAGAGGAGAGTTATATTATTGTTTAGTAGCCAAGGATGACTTGCCTGCTCCAATATTACTTATAAGGTTTTTAATTTTATCATTATTAATATAATGGTGACCTTTTATTGGTTGGTTTCAGGCAGTCTCCTTGGCTACCTTGACATGCTCTCCTCTTTCATGCAAGAACTCCTCTTTCGTTTTTTTAGTCGAATGAC
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTG 	82
-------------------------------------------------------------TAGCCAAGGATGACTTGCC 	5
---------------------------------------------------------------GCCAAGGATGACTTGCCTG 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Solanum lycopersicum GSM304985 TAGCCAAGGATGACTTGCCTG AGCAGGTCATCTTTAGCTAGC up 2 0


Secondary structure

GTCTTATTTAAAAGAAGAGAAGTCTAGCATGATGAGAAGAGTCTTATTTGGTAGCCAAGGATGACTTGCCTGCACCGTACTTGAAAAGGTCTTTCATATGTCCTTTCGTTTTTGGGGTCAAGCAGGTCATCTTTAGCTAGCTTGACAAGCTCTTCTTTTTCATGCAAGGCTTTCTCTTCTTTCGTTTTT
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	82
---------------------------------------------------TAGCCAAGGATGACTTGCC 	5
-----------------------------------------------------GCCAAGGATGACTTGCCTG 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Solanum lycopersicum GSM304986 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTACT up 0 2


Secondary structure

GAAATGATAAAAGAAGAGTGTGTCTTACATGAAGGGAAGTGCCTAATTTGATAGCCAAGGATGACTTGCCTGCATCATTAGTTCTTGAGGCTAGCTTGTGATATATATCATGTATATGACATGTATACAAGCATTCTTCTTTGATGGCCAGGCAGTCTCCTTGGCTACTCTAATAGGTTCCTCTCATTCATGCTAGACTCTTCTCTTCTTATTTAGA
--------------------------------------------------ATAGCCAAGGATGACTTGCCTG 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	11


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Solanum lycopersicum GSM304986 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTTGGCTACT up 2 1


Secondary structure

AAGAAATGGTAAAAGAAGAGTGTCTTACATGAAGGGTAAGTGCCTATTTGATAGCCAAGGATGACTTGCCTGCATCATTAATTAATTCTTGAGGCTAGCTTGTGATATATATCATGTATATGACATGTATACAAGCATTCTTCTTTGATGGCCAGGCAGTCTCCTTTGGCTACTCGAATAGGTTCCTCTCATTCATGCTAGACTCTTCTCTTCTTATTTAGC
--------------------------------------------------ATAGCCAAGGATGACTTGCCTG 	2
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	11


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Solanum lycopersicum GSM304986 TAGCCAAGGATGACTTGCCTG AGCAGGTCATCTTTAGCTAGC up 2 0


Secondary structure

GTCTTATTTAAAAGAAGAGAAGTCTAGCATGATGAGAAGAGTCTTATTTGGTAGCCAAGGATGACTTGCCTGCACCGTACTTGAAAAGGTCTTTCATATGTCCTTTCGTTTTTGGGGTCAAGCAGGTCATCTTTAGCTAGCTTGACAAGCTCTTCTTTTTCATGCAAGGCTTTCTCTTCTTTCGTTTTT
---------------------------------------------------TAGCCAAGGATGACTTGCCTG 	11


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Solanum lycopersicum GSM304986 TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTACC up 0 2


Secondary structure

ATATATATATGAAAAAAGAAGAGATGTCTTACATGAAGAGGAGAGTTATATTATTGTTTAGTAGCCAAGGATGACTTGCCTGCTCCAATATTACTTATAAGGTTTTTAATTTTATCATTATTAATATAATGGTGACCTTTTATTGGTTGGTTTCAGGCAGTCTCCTTGGCTACCTTGACATGCTCTCCTCTTTCATGCAAGAACTCCTCTTTCGTTTTTTTAGTCGAATGAC
-------------------------------------------------------------TAGCCAAGGATGACTTGCCTG 	11


HuntMi prediction: true miRNA