miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGGAACTTCATACCGTGCTCT

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TAGGAACTTCATACCGTGCTCT AGCGAGGTATAGAGTTCCTACG down 4 0


Secondary structure

GCAATGACCACTAGCGAGGTATAGAGTTCCTACGTTCAAATTATTAATGTTACTCGTAGGAACTTCATACCGTGCTCTTGGACTTGC
------------AGCGAGGTATAGAGTTCCTACGTT 	2
------------AGCGAGGTATAGAGTTCCTACGT 	45
------------AGCGAGGTATAGAGTTCCTACG 	1057
------------AGCGAGGTATAGAGTTCCTAC 	37
------------AGCGAGGTATAGAGTTCCTA 	5
------------AGCGAGGTATAGAGTTCCT 	2
-------------GCGAGGTATAGAGTTCCTAC 	1
--------------CGAGGTATAGAGTTCCTACG 	1
----------------------------------TTCAAATTATTAATGTTACTCG 	5
----------------------------------TTCAAATTATTAATGTTACTC 	2
------------------------------------------------------CGTAGGAACTTCATACCGTGCTCT 	1
-------------------------------------------------------GTAGGAACTTCATACCGTGCTCTT 	2
--------------------------------------------------------TAGGAACTTCATACCGTGCTCTT 	12867
--------------------------------------------------------TAGGAACTTCATACCGTGCTCT 	229014
--------------------------------------------------------TAGGAACTTCATACCGTGCTC 	14657
--------------------------------------------------------TAGGAACTTCATACCGTGCT 	26374
--------------------------------------------------------TAGGAACTTCATACCGTGC 	1409
--------------------------------------------------------TAGGAACTTCATACCGTGCTCTTG 	29
---------------------------------------------------------AGGAACTTCATACCGTGCTCTT 	19
---------------------------------------------------------AGGAACTTCATACCGTGCTCT 	138
---------------------------------------------------------AGGAACTTCATACCGTGCTC 	5
---------------------------------------------------------AGGAACTTCATACCGTGCT 	11
----------------------------------------------------------GGAACTTCATACCGTGCTCTT 	3
----------------------------------------------------------GGAACTTCATACCGTGCTCT 	68
----------------------------------------------------------GGAACTTCATACCGTGCTC 	5


Overlaps with: MNEST035076
Overlaps with miRBase pre-miRNAs: api-mir-276
HuntMi prediction: true miRNA