miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGGATTCAATCCTTGCTGCT

selected species: Oryza sativa



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM571078-22531 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
------------------------------TTAGGATTCAATCCTTGCTGC 	298
------------------------------TTAGGATTCAATCCTTGCTGCT 	1
------------------------------TTAGGATTCAATCCTTGCT 	1
-------------------------------TAGGATTCAATCCTTGCTGCT 	508
-------------------------------TAGGATTCAATCCTTGCTGC 	42
-------------------------------TAGGATTCAATCCTTGCTGCTAA 	10
-------------------------------TAGGATTCAATCCTTGCTGCTA 	13
-------------------------------TAGGATTCAATCCTTGCTG 	3
-------------------------------TAGGATTCAATCCTTGCTGCTAAA 	1
--------------------------------AGGATTCAATCCTTGCTGCT 	36
--------------------------------AGGATTCAATCCTTGCTGC 	4
--------------------------------AGGATTCAATCCTTGCTGCTAA 	1
--------------------------------AGGATTCAATCCTTGCTGCTA 	1
--------------------------------AGGATTCAATCCTTGCTGCTAAA 	1
---------------------------------GGATTCAATCCTTGCTGCT 	2
------------------------------------------------------------------------------------TCAGCAGCAAGAACTGGATCT 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	51
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	8
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATA 	5


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM520638-18676 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
---------------------TTGACTGCATTAGGATTCAAT 	1
-----------------------------ATTAGGATTCAATCCTTGCTGC 	3
------------------------------TTAGGATTCAATCCTTGCTG 	3
------------------------------TTAGGATTCAATCCTTGCTGC 	382
------------------------------TTAGGATTCAATCCTTGCTGCT 	3
------------------------------TTAGGATTCAATCCTTGCT 	12
-------------------------------TAGGATTCAATCCTTGCTGCTA 	3
-------------------------------TAGGATTCAATCCTTGCTG 	27
-------------------------------TAGGATTCAATCCTTGCTGC 	5
-------------------------------TAGGATTCAATCCTTGCTGCT 	1825
--------------------------------AGGATTCAATCCTTGCTGCT 	9
---------------------------------GGATTCAATCCTTGCTGCT 	1
------------------------------------------------------------------------------------TCAGCAGCAAGAACTGGATCT 	4
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTT 	1
---------------------------------------------------------------------------------------GCAGCAAGAACTGGATCTTAA 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTA 	2
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	82
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	15
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATA 	25
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAA 	2
------------------------------------------------------------------------------------------GCAAGAACTGGATCTTAAT 	1


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM686040-31373 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
------------------------------TTAGGATTCAATCCTTGCTGC 	20
-------------------------------TAGGATTCAATCCTTGCTGCTAAA 	3
-------------------------------TAGGATTCAATCCTTGCTGCTA 	3
-------------------------------TAGGATTCAATCCTTGCTGCT 	440
-------------------------------TAGGATTCAATCCTTGCTGC 	14
-------------------------------TAGGATTCAATCCTTGCTG 	4
--------------------------------AGGATTCAATCCTTGCTGCTAAAT 	1
--------------------------------AGGATTCAATCCTTGCTGCT 	2
------------------------------------------------------------------------------------TCAGCAGCAAGAACTGGATCT 	2
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTAAT 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAATA 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	211
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAA 	1
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATA 	21
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	39
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAA 	1


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520640-18679 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
---------------------TTGACTGCATTAGGATTCAAT 	1
-----------------------------ATTAGGATTCAATCCTTGCTGC 	8
------------------------------TTAGGATTCAATCCTTGCT 	11
------------------------------TTAGGATTCAATCCTTGCTG 	1
------------------------------TTAGGATTCAATCCTTGCTGC 	500
------------------------------TTAGGATTCAATCCTTGCTGCT 	1
-------------------------------TAGGATTCAATCCTTGCTGCTAA 	2
-------------------------------TAGGATTCAATCCTTGCTGCTA 	9
-------------------------------TAGGATTCAATCCTTGCTG 	20
-------------------------------TAGGATTCAATCCTTGCTGC 	6
-------------------------------TAGGATTCAATCCTTGCTGCT 	1321
--------------------------------AGGATTCAATCCTTGCTGCT 	3
---------------------------------GGATTCAATCCTTGCTGCT 	1
-----------------------------------------------------------------------------------TTCAGCAGCAAGAACTGGATC 	1
------------------------------------------------------------------------------------TCAGCAGCAAGAACTGGATCT 	5
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTAAT 	6
--------------------------------------------------------------------------------------AGCAGCAAGAACTGGATCTTAAT 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	79
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	10
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATA 	35
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAA 	3
------------------------------------------------------------------------------------------GCAAGAACTGGATCTTAAT 	2


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM571077-22529 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
-----------TGCTCCACTGTTGACTGCA 	1
------------------------------TTAGGATTCAATCCTTGCTGC 	87
------------------------------TTAGGATTCAATCCTTGCTGCT 	1
-------------------------------TAGGATTCAATCCTTGCTGCT 	250
-------------------------------TAGGATTCAATCCTTGCTGC 	16
-------------------------------TAGGATTCAATCCTTGCTGCTA 	8
-------------------------------TAGGATTCAATCCTTGCTGCTAA 	2
-------------------------------TAGGATTCAATCCTTGCTG 	2
--------------------------------AGGATTCAATCCTTGCTGCT 	21
--------------------------------AGGATTCAATCCTTGCTGC 	5
--------------------------------AGGATTCAATCCTTGCTGCTA 	2
---------------------------------GGATTCAATCCTTGCTGCT 	2
------------------------------------------------------------------------------------TCAGCAGCAAGAACTGGATCT 	3
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTAAT 	1
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTAA 	1
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTA 	1
---------------------------------------------------------------------------------------GCAGCAAGAACTGGATCTTAA 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	71
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAA 	1
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	14
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATA 	11
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAA 	1


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM686039-31370 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
------------------------------TTAGGATTCAATCCTTGCTGC 	47
------------------------------TTAGGATTCAATCCTTGCTG 	2
-------------------------------TAGGATTCAATCCTTGCTGCTAAA 	2
-------------------------------TAGGATTCAATCCTTGCTGCTAA 	8
-------------------------------TAGGATTCAATCCTTGCTGCTA 	3
-------------------------------TAGGATTCAATCCTTGCTGCT 	477
-------------------------------TAGGATTCAATCCTTGCTGC 	15
-------------------------------TAGGATTCAATCCTTGCTG 	4
--------------------------------AGGATTCAATCCTTGCTGCT 	2
--------------------------------AGGATTCAATCCTTGCTGC 	3
---------------------------------GGATTCAATCCTTGCTGCTAAA 	1
------------------------------------------------------------------------------------TCAGCAGCAAGAACTGGATCT 	3
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTAAT 	5
---------------------------------------------------------------------------------------GCAGCAAGAACTGGATCTTAAT 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAATA 	2
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	213
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAA 	3
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATA 	158
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	109
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAA 	1


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM520634-18667 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
-------------------------------TAGGATTCAATCCTTGCTGCT 	9


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520637-18674 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
------------------------------TTAGGATTCAATCCTTGCTGC 	92
------------------------------TTAGGATTCAATCCTTGCT 	1
-------------------------------TAGGATTCAATCCTTGCTGCTAAA 	2
-------------------------------TAGGATTCAATCCTTGCTG 	20
-------------------------------TAGGATTCAATCCTTGCTGC 	2
-------------------------------TAGGATTCAATCCTTGCTGCT 	372
--------------------------------AGGATTCAATCCTTGCTGCT 	1
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTAAT 	1
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	12
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	1
------------------------------------------------------------------------------------------GCAAGAACTGGATCTTAAT 	1
-------------------------------------------------------------------------------------------------------CTTAATATAGTCGATAGTG 	1
----------------------------------------------------------------------------------------------------------------GTCGATAGTGGAAGAACGGT 	2


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520639-18678 TAGGATTCAATCCTTGCTGCT CAGCAAGAACTGGATCTTAAT up 3 0


Secondary structure

TGAAGGAAGATTGCTCCACTGTTGACTGCATTAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTAATATAGTCGATAGTGGAAGAACGGTAACAT
-----------------------------ATTAGGATTCAATCCTTGCTGCT 	2
------------------------------TTAGGATTCAATCCTTGCT 	2
------------------------------TTAGGATTCAATCCTTGCTGC 	245
-------------------------------TAGGATTCAATCCTTGCTG 	22
-------------------------------TAGGATTCAATCCTTGCTGCTA 	2
-------------------------------TAGGATTCAATCCTTGCTGCT 	840
--------------------------------AGGATTCAATCCTTGCTGCT 	5
------------------------------------------------------------------------------------TCAGCAGCAAGAACTGGATCT 	3
-------------------------------------------------------------------------------------CAGCAGCAAGAACTGGATCTTAAT 	10
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAAT 	76
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTAA 	2
----------------------------------------------------------------------------------------CAGCAAGAACTGGATCTTA 	2
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAAT 	11
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATA 	33
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAA 	5
-----------------------------------------------------------------------------------------AGCAAGAACTGGATCTTAATAT 	1


Overlaps with: MNEST046793
Overlaps with miRBase pre-miRNAs: osa-MIR1425
HuntMi prediction: true miRNA