miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGGTAGTTTCCTGTTGTTGG

selected species: Homo sapiens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM565979-9647 TAGGTAGTTTCCTGTTGTTGGG CGACAGCACGACACTGCCTTCA up 3 0


Secondary structure

CACCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCG
---------------------TAGGTAGTTTCCTGTTGTTGGGA 	51
---------------------TAGGTAGTTTCCTGTTGTTGGG 	267
---------------------TAGGTAGTTTCCTGTTGTTGG 	38
---------------------TAGGTAGTTTCCTGTTGTTGGGAT 	10
--------------------------------------------------------TCGACAGCACGACACTGCCTTCA 	6
--------------------------------------------------------TCGACAGCACGACACTGCCTTC 	6
--------------------------------------------------------TCGACAGCACGACACTGCCTT 	1

Overlaps with: MNEST028509 MNEST030889
Overlaps with miRBase pre-miRNAs: bta-mir-196b mmu-mir-196b cfa-mir-196b ptr-mir-196b cgr-mir-196b hsa-mir-196b mml-mir-196b ssc-mir-196b-2 ssc-mir-196b-1 rno-mir-196b ppy-mir-196b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494810_Normal_2 TAGGTAGTTTCCTGTTGTTGGG CGACAGCACGACACTGCCTTCA up 3 0


Secondary structure

CACCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCG
---------------------TAGGTAGTTTCCTGTTGTTGGGA 	3
---------------------TAGGTAGTTTCCTGTTGTTGGG 	8
---------------------TAGGTAGTTTCCTGTTGTTGG 	1
--------------------------------------------------------TCGACAGCACGACACTGCCTTCA 	2

Overlaps with: MNEST028509 MNEST030889
Overlaps with miRBase pre-miRNAs: bta-mir-196b mmu-mir-196b cfa-mir-196b ptr-mir-196b cgr-mir-196b hsa-mir-196b mml-mir-196b ssc-mir-196b-2 ssc-mir-196b-1 rno-mir-196b ppy-mir-196b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM565978-9532 TAGGTAGTTTCCTGTTGTTGGG CGACAGCACGACACTGCCTTCA up 3 0


Secondary structure

CACCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCG
---------------------TAGGTAGTTTCCTGTTGTTGGGAT 	7
---------------------TAGGTAGTTTCCTGTTGTTGGGA 	33
---------------------TAGGTAGTTTCCTGTTGTTGGG 	219
---------------------TAGGTAGTTTCCTGTTGTTGG 	24
---------------------TAGGTAGTTTCCTGTTGTTG 	5
----------------------AGGTAGTTTCCTGTTGTTGGG 	1
--------------------------------------------------------TCGACAGCACGACACTGCCTTCA 	4
--------------------------------------------------------TCGACAGCACGACACTGCCTTC 	5
--------------------------------------------------------TCGACAGCACGACACTGCCTT 	3

Overlaps with: MNEST028509 MNEST030889
Overlaps with miRBase pre-miRNAs: bta-mir-196b mmu-mir-196b cfa-mir-196b ptr-mir-196b cgr-mir-196b hsa-mir-196b mml-mir-196b ssc-mir-196b-2 ssc-mir-196b-1 rno-mir-196b ppy-mir-196b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM569188 TAGGTAGTTTCCTGTTGTTGGG CGACAGCACGACACTGCCTTCA up 3 0


Secondary structure

CACCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCG
---------------------TAGGTAGTTTCCTGTTGTTGG 	3
---------------------TAGGTAGTTTCCTGTTGTTGGG 	5

Overlaps with: MNEST028509 MNEST030889
Overlaps with miRBase pre-miRNAs: bta-mir-196b mmu-mir-196b cfa-mir-196b ptr-mir-196b cgr-mir-196b hsa-mir-196b mml-mir-196b ssc-mir-196b-2 ssc-mir-196b-1 rno-mir-196b ppy-mir-196b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM569187 TAGGTAGTTTCCTGTTGTTGG GACAGCACGACACTGCCTTCA up 3 0


Secondary structure

CACCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCG
---------------------TAGGTAGTTTCCTGTTGTTGGG 	1
---------------------TAGGTAGTTTCCTGTTGTTGGGA 	2
---------------------TAGGTAGTTTCCTGTTGTTGG 	7

Overlaps with: MNEST028509 MNEST030889
Overlaps with miRBase pre-miRNAs: bta-mir-196b mmu-mir-196b cfa-mir-196b ptr-mir-196b cgr-mir-196b hsa-mir-196b mml-mir-196b ssc-mir-196b-2 ssc-mir-196b-1 rno-mir-196b ppy-mir-196b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531982 TAGGTAGTTTCCTGTTGTTGGG CGACAGCACGACACTGCCTTCA up 3 0


Secondary structure

CACCAGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAATCG
---------------------TAGGTAGTTTCCTGTTGTTGGG 	6
---------------------TAGGTAGTTTCCTGTTGTTGG 	5
---------------------TAGGTAGTTTCCTGTTGTTGGGA 	1

Overlaps with: MNEST028509 MNEST030889
Overlaps with miRBase pre-miRNAs: bta-mir-196b mmu-mir-196b cfa-mir-196b ptr-mir-196b cgr-mir-196b hsa-mir-196b mml-mir-196b ssc-mir-196b-2 ssc-mir-196b-1 rno-mir-196b ppy-mir-196b
HuntMi prediction: true miRNA