miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGGTCACCCGTTTTACTATC

selected species: Mus musculus



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527280 TAGGTCACCCGTTTTACTATC TGGTAGACCGGTGACGTACA down 2 1


Secondary structure

TAGCTGTGTGGATGGTAGACCGGTGACGTACACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCACCAACAC
----------------------------------------------TAGGTCACCCGTTTTACTATCC 	2
----------------------------------------------TAGGTCACCCGTTTTACTATC 	5
----------------------------------------------TAGGTCACCCGTTTTACTAT 	2

Overlaps with: MNEST032387 MNEST032388
Overlaps with miRBase pre-miRNAs: mmu-mir-1193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527276 TAGGTCACCCGTTTTACTATC TGGTAGACCGGTGACGTACA down 2 1


Secondary structure

TAGCTGTGTGGATGGTAGACCGGTGACGTACACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCACCAACAC
-----------ATGGTAGACCGGTGACGTACA 	1
-----------ATGGTAGACCGGTGACGTAC 	1
----------------------------------------------TAGGTCACCCGTTTTACTATCC 	5
----------------------------------------------TAGGTCACCCGTTTTACTATC 	21
----------------------------------------------TAGGTCACCCGTTTTACTAT 	7

Overlaps with: MNEST032387 MNEST032388
Overlaps with miRBase pre-miRNAs: mmu-mir-1193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527277-2110 TAGGTCACCCGTTTTACTATC TGGTAGACCGGTGACGTACA down 2 1


Secondary structure

TAGCTGTGTGGATGGTAGACCGGTGACGTACACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCACCAACAC
------------TGGTAGACCGGTGACGTAC 	2
--------------------------------------------TGTAGGTCACCCGTTTTACT 	1
----------------------------------------------TAGGTCACCCGTTTTACTAT 	11
----------------------------------------------TAGGTCACCCGTTTTACTATCC 	9
----------------------------------------------TAGGTCACCCGTTTTACTATC 	34
----------------------------------------------TAGGTCACCCGTTTTACTA 	2

Overlaps with: MNEST032387 MNEST032388
Overlaps with miRBase pre-miRNAs: mmu-mir-1193
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527279-2112 TAGGTCACCCGTTTTACTATC TGGTAGACCGGTGACGTACA down 2 1


Secondary structure

TAGCTGTGTGGATGGTAGACCGGTGACGTACACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCACCAACAC
-----------ATGGTAGACCGGTGACGTACA 	1
------------TGGTAGACCGGTGACGTACACT 	1
--------------------------------------------TGTAGGTCACCCGTTTTACT 	1
--------------------------------------------TGTAGGTCACCCGTTTTACTATC 	1
----------------------------------------------TAGGTCACCCGTTTTACTAT 	10
----------------------------------------------TAGGTCACCCGTTTTACTA 	1
----------------------------------------------TAGGTCACCCGTTTTACTATCC 	11
----------------------------------------------TAGGTCACCCGTTTTACTATC 	29

Overlaps with: MNEST032387 MNEST032388
Overlaps with miRBase pre-miRNAs: mmu-mir-1193
HuntMi prediction: true miRNA