miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TAGTACGTCGTTCTCCGGACGG

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TAGTACGTCGTTCTCCGGACGG CGCCGGGGTATGACGTCGTACT down 5 0


Secondary structure

GCGCTGCAGTCTTTCGTTTACTCGCCGGGGTATGACGTCGTACTGTGACGTAGGTTGCGCAGTAGTACGTCGTTCTCCGGACGGTATTAGGAAGAACTATCAT
--------------------------------------------------------------TAGTACGTCGTTCTCCGGACGG 	8
--------------------------------------------------------------TAGTACGTCGTTCTCCGGACG 	2

Overlaps with: MNEST025067 MNEST025068
Overlaps with miRBase pre-miRNAs: cin-mir-4053
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343285 TAGTACGTCGTTCTCCGGACGG CGCCGGGGTATGACGTCGTACT down 5 0


Secondary structure

GCGCTGCAGTCTTTCGTTTACTCGCCGGGGTATGACGTCGTACTGTGACGTAGGTTGCGCAGTAGTACGTCGTTCTCCGGACGGTATTAGGAAGAACTATCAT
----------------------CGCCGGGGTATGACGTCGTACT 	8
----------------------CGCCGGGGTATGACGTCGTA 	3
----------------------CGCCGGGGTATGACGTCGT 	10
-------------------------------------------------------------GTAGTACGTCGTTCTCCGG 	2
--------------------------------------------------------------TAGTACGTCGTTCTCCGGACGGT 	10
--------------------------------------------------------------TAGTACGTCGTTCTCCGGACGG 	3153
--------------------------------------------------------------TAGTACGTCGTTCTCCGGACG 	111
--------------------------------------------------------------TAGTACGTCGTTCTCCGGAC 	144
--------------------------------------------------------------TAGTACGTCGTTCTCCGGA 	87
---------------------------------------------------------------AGTACGTCGTTCTCCGGACGG 	1
---------------------------------------------------------------AGTACGTCGTTCTCCGGACG 	1
----------------------------------------------------------------GTACGTCGTTCTCCGGACGG 	1

Overlaps with: MNEST025067 MNEST025068
Overlaps with miRBase pre-miRNAs: cin-mir-4053
HuntMi prediction: true miRNA